Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2525 ATGACACAATCTGGTGGTGAAGTTGTTAAGGAGATGGATAAAGAAGAAAATGAGAACCATGCTGCTGATGATGTGCGCGATGTAGAAAATGGTGGTCGATTGGATGGGAATGATGAGGAAATTGGAAGGTACTGGTCAGAGTTATCTGAAAGGAACAGGGCATATGCAGAGCCACTTCTTGCAAAGAGGACTAACACTACCTCCCAGATTGCTATTGTTGGATCCAACCTCTACCCTATTGAAAGCCTTGACTATGAGGTTTTTGATAATGACATATTTAACCAGGACTGGAGATCCAGGAAGAAGGTTCAGATATTCCAGTATGTGGTTCTTAAGTGGGCATTAGCTCTCCTTATTGGACTAGGAACCGGACTGGTTGGGTGGTTTAATAACGTGTCGGTTGAGAACATAGCTGGTTTTAAGCTGGTTTTGACAACCAATCTCATGTCTAAACAAAGATACCTTGACGCTTTTCTAGCATATGCTGGTCTCAATATAGTTTTAGCAGCAGCTGCTTCAGCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGGATTCCGGAGGTTAAAGCATATCTCAATGGCATCGACGCTCACACCATTCTAGCTCCAAGAACCCTTTTTGTAAAGATTGTTGGTTCCATTCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAAGGACCTATGGTTCATACAGGTGCTTGTATAGCTTCTTTGTTGGGGCAGGGTGGATCTCGCAAGTATCATTTGACTTGGACTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACGTGTGGTGCAGCTGCGGGTGTTGCTGCTGCCTTTCGTGCTCCAGTAGGTGGTGTCCTTTTTGCCCTTGAAGAGGCGGCTTCATGGTGGAGGAGTGCTCTACTTTGGAGGACATTTTTCACTACAGCAGTGGTTGCTATTGTTTTAAGATCTGCAATTCAGATTTGTTCCTCAGGGAATTGTGGGCTATTTGGGGAAGGTGGTCTTATATTGTATGATGTAAGTTCAGCCAAGGTAACATATAGCGGTGGTGATATAGTAGCAGTTATAGTCTTGGGAACCATTGCTGGTTTTCTTGGAAGCATATACAATTTCCTCGTGGATAAGGTCGTTCGCATGTATAGCATCATCAATGAAAAAGGTGCAGCTTACAAAATCTCTCTTGCTGTCACTGTTGCTATTTTAACATCATGTTGTTATTATTTCCTACCATGGATTGCAAGTTGCACCCCATGTCCTACTGATAAGGGAGTGATTTGTCCCTCTGTTGATGAGTCAGGAGAATACAAAATGTTTCAATGTCCACCAGACCACTACAATGATCTTGCTTCCCTCTTCTTAAATACCAACGATGATGCGATTCGTAATCTTTTCAGTCCCAAGATAACCAAAGAATTTCATATTTCCAGTTTGTTTATCTTCTTTGCTACTATTTACTTTCTTGGGATAATCACATATGGTATTGCTATTCCATCTGGGCTTTTCATTCCCGTCATACTTGCTGGGGCTGCCTACGGGCGTCTTATCGGGAGGCTCTTTGAACCAATCACGAAACTTGAAACCGGACTCTTTGCCCTCCTTGGAGCTGCCTCCTTGCTTGGTGGCACCATGAGAATGACAGTCTCACTTTGTGTTATACTACTTGAGCTCACTAATGATCTCTTGTTACTTCCCCTTGTGATGCTGGCCTTGTTAATCTCGAAAACTGTGGCTGATTGCTTCAACAAGGGCGTCTACGATCAAATTCTGAAGATCAAAGGGCTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAATATTGTTGCACGTGATGTTGTCTCGGGTCCATTGATGACCTTTTCTGGCATTGAAAGGGTTGCAAATATAATGCATGTTTTGAACACTACAGGGCATAACGGATTTCCTGTCATTGATGAACCGCCTTTCTCAGATTCACCAGAATTGTGTGGGCTTGTACTGAGGTCTCATTTACTAGTTTTGCTGAAGGCAAAGAACTTTACAAGAGACAGGGTGTTCGCGGATCAGAGTATCATAGATAAAGTTTCTGTATTAGATTTTGGGAAAGCAGGATCAGGGAAGGGAATCAAATTAGAGGATCTAGATTTAGAAGAAGAAGAGTTGGATATGTATGTTGATCTCCATCCAATTACTAATTCATCCCCACACACTGTAGTTGAGACAATGTCACTAGCCAAAGCTGCCATTATTTTCCGCCAACAAGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTCATGCCTGAGCATGTTTTGGGGCTTTACCCTGATATTAAACATCACAAATGGCACTGA 2394 0.4323 MTQSGGEVVKEMDKEENENHAADDVRDVENGGRLDGNDEEIGRYWSELSERNRAYAEPLLAKRTNTTSQIAIVGSNLYPIESLDYEVFDNDIFNQDWRSRKKVQIFQYVVLKWALALLIGLGTGLVGWFNNVSVENIAGFKLVLTTNLMSKQRYLDAFLAYAGLNIVLAAAASALCAFIAPAAAGSGIPEVKAYLNGIDAHTILAPRTLFVKIVGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRSAIQICSSGNCGLFGEGGLILYDVSSAKVTYSGGDIVAVIVLGTIAGFLGSIYNFLVDKVVRMYSIINEKGAAYKISLAVTVAILTSCCYYFLPWIASCTPCPTDKGVICPSVDESGEYKMFQCPPDHYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIFFATIYFLGIITYGIAIPSGLFIPVILAGAAYGRLIGRLFEPITKLETGLFALLGAASLLGGTMRMTVSLCVILLELTNDLLLLPLVMLALLISKTVADCFNKGVYDQILKIKGLPYLEAHAEPYMRNIVARDVVSGPLMTFSGIERVANIMHVLNTTGHNGFPVIDEPPFSDSPELCGLVLRSHLLVLLKAKNFTRDRVFADQSIIDKVSVLDFGKAGSGKGIKLEDLDLEEEELDMYVDLHPITNSSPHTVVETMSLAKAAIIFRQQGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDIKHHKWH* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2525 797 PRINTS Plant CLC chloride channel signature 86 94 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja2g2525 797 PRINTS Plant CLC chloride channel signature 297 305 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja2g2525 797 PRINTS Plant CLC chloride channel signature 453 469 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja2g2525 797 PRINTS Plant CLC chloride channel signature 329 336 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja2g2525 797 PRINTS Plant CLC chloride channel signature 311 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja2g2525 797 MobiDBLite consensus disorder prediction 1 35 - -
Lja2g2525 797 ProSiteProfiles CBS domain profile. 614 683 IPR000644 -
Lja2g2525 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 45 795 - -
Lja2g2525 797 PRINTS Chloride channel signature 551 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 181 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 212 231 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 533 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 276 295 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 501 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PRINTS Chloride channel signature 589 603 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 45 795 - -
Lja2g2525 797 SUPERFAMILY CBS-domain pair 606 780 IPR046342 -
Lja2g2525 797 SUPERFAMILY Clc chloride channel 90 605 IPR014743 -
Lja2g2525 797 Pfam Voltage gated chloride channel 169 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja2g2525 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 615 782 - -
Lja2g2525 797 MobiDBLite consensus disorder prediction 8 35 - -
Lja2g2525 797 CDD ClC_6_like 81 602 - -
Lja2g2525 797 Pfam CBS domain 731 779 IPR000644 -
Lja2g2525 797 Gene3D Clc chloride channel 104 602 - -
Lja2g2525 797 Gene3D - 603 785 IPR046342 -
Lja2g2525 797 ProSiteProfiles CBS domain profile. 729 791 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2525 Lja-Chr2 32851053 32859244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2525 13 795 Ion Channels AT5G49890 70.140 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2525 K05016 - gmx:100809070 1206.43