Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2517 ATGGAAGAAGAGAACGAAATCGAAGTGTCGAAATCGTTTAAGGATTTGGGTTTGCCCGATTCATTGGTAGAAGCTTGTGAAAAATTGGGTTGGACAACCCCATTGAAGATACAGGCAGAAGCCATTCCTCTTGCGCTGCAAGGAAAGGATGTCATTGGACTTGCTCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCTCGCCCGAATCATTTCTTTGCTTGTGTGATGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGCGCTGTGCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCTCATATTATTGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAATACTTGGTTTTGGATGAAGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGAGCGGAGAACATTTCTATTTTCTGCTACTATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGATTGTTACCTTGTATATATTCTCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTCAACCCGGCTCCTGGCTTTGATTCTTAGGAATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAATCGAAGAGACTAGGAGCGTTGAATAAGTTCAAGTCGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACGGTCGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGGGCGCTCTGGGGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATGATGAAAATGAAGGAAGCTGGAGGGAAGAAGAAACGAAGAGGAGGTGAAGATGATTTAGCTGAGGAGGATATTGACAAGTACTTGGGTCTCAAGGAAGGAAAATCATCCAAAAAGTTTAGAAGAAGATGA 1329 0.4296 MEEENEIEVSKSFKDLGLPDSLVEACEKLGWTTPLKIQAEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNHFFACVMSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSFSRLKYLVLDEADRLLNEDFEESLNEILQAIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAESTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEVEVLLLEERVGEAKRLAMMKMKEAGGKKKRRGGEDDLAEEDIDKYLGLKEGKSSKKFRRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2517 442 PANTHER BNAC02G41920D PROTEIN 5 430 - -
Lja2g2517 442 Pfam Helicase conserved C-terminal domain 242 347 IPR001650 -
Lja2g2517 442 SMART helicmild6 266 347 IPR001650 -
Lja2g2517 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 368 IPR027417 -
Lja2g2517 442 CDD DEADc_DDX47 12 216 IPR044765 GO:0005524
Lja2g2517 442 Gene3D - 1 220 IPR027417 -
Lja2g2517 442 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Lja2g2517 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 11 39 IPR014014 GO:0003724
Lja2g2517 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 42 215 IPR014001 -
Lja2g2517 442 SMART ultradead3 30 230 IPR014001 -
Lja2g2517 442 Pfam DEAD/DEAH box helicase 36 204 IPR011545 GO:0003676|GO:0005524
Lja2g2517 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 386 IPR001650 -
Lja2g2517 442 PANTHER RNA HELICASE 5 430 - -
Lja2g2517 442 Gene3D - 221 391 IPR027417 -
Lja2g2517 442 CDD SF2_C_DEAD 227 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2517 Lja-Chr2 32711174 32717556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2517 1 386 Eukaryotic Initiation Factors Gene Family AT3G19760 30.513 1.34e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2517 K14777 - gmx:100775796 776.933