Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2514 ATGAGTCGCAAGCGGGACAGACCCAATGTTTCCCGCCAAGCTTCCAAGCGCCGCCGCCCCCTGCCGGAGCCCGTGGAGGAGGAGAGACCCTCGATTAGGCCGTCACCGCCGTCAGCATTGGTCGTAATGGGTCTCCCTATCGACTGCTCTGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCTCGCATCCGCATCGACCGCGACGCCGTCGGATATATCACCTACCGGAGTAAGGACTCCGCTGACGCCGCCATCGCCGCCGGTGTTGACCCTTCCTTCGGAATCACCGTCAATTCGAAAAAGGTTCAGGTTCTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAAGCTCCATGTCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGAAGGCATGGAAGGGGTAATAGACTCGCATCATCTATAGGGAATACCAAAAGTATTCAGGATAGGTTGGGTACTTCAGTTCTAGAAGCGCCTTTCAGGGGCAGGGAAATTGTTGCTTATGATGATATTCTGTAA 558 0.5448 MSRKRDRPNVSRQASKRRRPLPEPVEEERPSIRPSPPSALVVMGLPIDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSIQDRLGTSVLEAPFRGREIVAYDDIL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2514 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
Lja2g2514 185 MobiDBLite consensus disorder prediction 1 37 - -
Lja2g2514 185 CDD RRM_SF 40 108 - -
Lja2g2514 185 SUPERFAMILY RNA-binding domain, RBD 20 119 IPR035979 GO:0003676
Lja2g2514 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
Lja2g2514 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Lja2g2514 185 MobiDBLite consensus disorder prediction 16 30 - -
Lja2g2514 185 Gene3D - 1 115 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2514 1 185 Homeobox Transcription Factor Family AT1G27050 51.707 5.10e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2514 - - ccaj:109806897 283.878