Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2507 ATGGGGTCTCGGGGGAGGGGAAATAAGCCTAGTAAGCCTTTGAAGGAATCAAGAACATCTAATTCTCTATCAGATTCCATGCCTGCCATGAAAAAGAATTCTGAGCTGACTCATTTTGGAGCTATATTCAACAAGTTGGTGAAGGAGCTTAAGGAGCCTGTTGTTGATTTTGAACTTCCAGATTGTTTTCATAAGTCGAAGGCAATGGAGTATATTCATATAAAACGCAATATATATCTCACTAAGAAGTTCAAGAGACGGTTTGATGATGATGGCATATTTTGTTCCTGTTCATCTGAATCTCCACCTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCAATCTAGTTGCTCCTCAGGCTGTAACTGTGGGAGCTTATGTCTTAACAAGCCATTTCAGAGTCGCCCTATAAAAAAGATGAAGTTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTCGCGGATGAAGATATCAAGCTTGGGGACTTTGTTGTTGAGTATGTTGGAGAAGTTATTGATGACAAAACATGTGAAGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTTTACCTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAGTCAAGATATATCAATCATAGCTGCTGCCCCAATACTGAGATGCAGAAATGGATAGTTGATGGTGAAACACGAATTGGCATATTTGCAACGCGTGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGCTGGGTGCAGGCGTAAGCTAGGTGCTCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCTTGCAAATCGGAAGTTCTCGTGTTGACAAATCACTGTGCATACACAATTGCATTGGTAATATTGTTATGATAAAACAGCTAGGAAATGCGAGGTTTGGGCATATTTTACGGTTCGATAAATATTCCCGAAAACACTCGATCCTGTTTGAGGATGGCTGTGTTGAGATTTATGATATGTCAAAAGAAGATTGGGAACTTGTGAGATTGTGA 1122 0.4037 MGSRGRGNKPSKPLKESRTSNSLSDSMPAMKKNSELTHFGAIFNKLVKELKEPVVDFELPDCFHKSKAMEYIHIKRNIYLTKKFKRRFDDDGIFCSCSSESPPVCGRDCHCGMLQSSCSSGCNCGSLCLNKPFQSRPIKKMKLVKTEKCGSGIVADEDIKLGDFVVEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIVDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAGCRRKLGARPTKPKMSSDAALKLVAYQVCQNGGLQIGSSRVDKSLCIHNCIGNIVMIKQLGNARFGHILRFDKYSRKHSILFEDGCVEIYDMSKEDWELVRL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2507 373 ProSiteProfiles Post-SET domain profile. 262 278 IPR003616 -
Lja2g2507 373 SUPERFAMILY SET domain 68 274 IPR046341 -
Lja2g2507 373 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 71 320 IPR025787 -
Lja2g2507 373 ProSiteProfiles AWS domain profile. 90 137 IPR006560 GO:0005634|GO:0018024
Lja2g2507 373 ProSiteProfiles SET domain profile. 139 256 IPR001214 GO:0005515
Lja2g2507 373 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 39 370 - -
Lja2g2507 373 SMART set_7 139 262 IPR001214 GO:0005515
Lja2g2507 373 PANTHER SET DOMAIN PROTEINS 39 370 - -
Lja2g2507 373 SMART shorttest3 90 138 IPR006560 GO:0005634|GO:0018024
Lja2g2507 373 CDD SET_ASHR3-like 140 278 - -
Lja2g2507 373 MobiDBLite consensus disorder prediction 1 27 - -
Lja2g2507 373 Pfam SET domain 150 255 IPR001214 GO:0005515
Lja2g2507 373 Gene3D SET domain 59 294 IPR046341 -
Lja2g2507 373 SMART PostSET_3 262 278 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2507 Lja-Chr2 32456867 32466734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2507 118 274 C2H2 Transcription Factor Family AT2G23740 35.593 2.14e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g2507 SET 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2507 - - lja:Lj0g3v0135089.1 775.778