Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2497 ATGCTCTCTCAAAAACAGTCTAATAACACATCCATGTCTTCCTATAACATTATTTTCTTCTTCATTCTCATTAGCTTCCTCAGTTTTTCAACTACTGAGGCACAAAACACTCCTGTTTTTCAATCTTCAACTTGCTTCAGCAATGATACGACCTCCGACAACAACAGAAGTGGCTTCCAATTGGATCTGAGGAGGAGCCTCCTCGCTTCATTGTCGTCAAAGGCCACTGAGAAAACACAATTCTTCAACACCACTGTCACTAGTACAACAGACCCCTCTGACTCCATCTATGGCTTGTTCATGTGCAGGGGTGACATCGCCTCTCAACTTTGTCAGCAATGCGTGGTAAATGCAACACAGCGACTATCCTCAGAGTGTTCCTTGTCCAAAGAAGCTGTGATTTGGTATGACGAGTGTATGGTTCGCTACTCCAATCGCTCTTTCTTCTCCACCATGGAAACAGTGCCGGCAGTTTATTTGTCAAGCTTCCCTAATATCCCAGAACCCGATCCTGATACCAGTATGAGTTTCCTGTTTGACACCATGAATTCAACTTCAGATGAAGCTTGCAGCAGGAAGACAAAGTTTGCCACAAGGGCAGTAGATATCCCACGCCTGTGGCAGACCGTTTACTTTCTAGCACAGTGCACACCAGACTTGTCACCCAGTGATTGCAGAACATGTCTAAGTGGGGCGATAGGAGAACTTCCTATCTGTTGTGATAGAAAGCTGGGAGCGAGAGTTCTATTTCCTAGCTGTAACATTAGGTACGAATTGTTCCCTTTCTATCGCAATGCCATTTTACCACCAAAAGATGGCGGCGGCGGCGGCTCGTATAGTAGGTCAGAGAAACCAAGATTTGAGAATAACATTAGGAATGAATTTTTGTTCCCTATCTATGTTCGCAGCTTATGCACAAGTGACCAATCCTCCCCTGATTTATCTTTCCAAAACGACACCAAGACCCTTCTCTCTCATTTTTCTTCCAACGCCACCAGATATGACGGCCTGAAAAATTATTATGGTGATGTGAACGGCAAGGTATATGGCCTCTTCATGTGCCGGGGCGATGTTCCCACTGACCTGTGCGGACAATGCATCATAAACGCAACACATCAAATATCCTCAGAGTGTCAATCATCCAAAGAGGCTATAATATGGTACAGGCAATGCATGCTTAGATATTCCAACCAGAATTTCCTTTCCAAAATGGAGACAAGTCCTACATATTCTGAGCTGAACATCACTAAAGCTTCCAACCAAATTAGCGAGTTCGGTTATCAATTATCAAATAACTTAAATCGACTCGCAAAAACCACAGGGTACAGTGATGGAAGATATAAAGTGGAATCACAGAATTTGAGTGATGTACAATCTCTATATACTCTTGGCCAGTGCACACCAGATTTGTCCAGTGTAGATTGCACGAATTGTCTGCAAGATTTGATTGGAAAATCAATTTTCTGGCGTTATTTGGGAAGTGGAGGGGGAAGAGTTATGTATCCCAGCTGCAATATGAGGTTTGAATTGTCCCAATTTTACAGAATTGAAGGTCCCAAAGCTCAACCACCCAATTCACCTCTGAGTCCATCAGGATCTACAGGAAAACAAAGTGGCCGAGGACGAACAGTCAATTTAGTTGCTGTGCTTGTGCCTTCAATTATAATTATTTTAGTGATGCTCTTTTCCTTTTGTTACTATGTGCAAAAGAGAAACGCACGAAAGAGACAAATGACAATTCTCAGAGAAAATTTTGGTAATGAAAGTGCAACTGTAGAGCCATTACAATTCGATTTTGTCGTAATTCAAGCAGCAACTAACAACTTTTCTGAGGACAATTACATTGGCAAAGGCGGATTTGGAAAGGTTTATAAGGGTATTCTTCATAATGGACAACAAATAGCAGTTAAGCGACTTTCAGAAAGTTCTAAGCAAGGTGTTGATGAGTTCAAGAACGAAGTGTTATTGATAGCGAAACTTCAACATAAAAATCTTGTGGCATTCGTTGGCTTTTGTCTTGAGGAACAAGAAAAAATACTCATTTACGAATATGTGCCAAACAAGAGCCTTGATTACTTTTTATACGGTTTGGAACACTTCACCTTATGCTTTTTACTCAATCCATTTTTAGTGTCATGCATAATTTATACATGTTTTTAA 2160 0.4125 MLSQKQSNNTSMSSYNIIFFFILISFLSFSTTEAQNTPVFQSSTCFSNDTTSDNNRSGFQLDLRRSLLASLSSKATEKTQFFNTTVTSTTDPSDSIYGLFMCRGDIASQLCQQCVVNATQRLSSECSLSKEAVIWYDECMVRYSNRSFFSTMETVPAVYLSSFPNIPEPDPDTSMSFLFDTMNSTSDEACSRKTKFATRAVDIPRLWQTVYFLAQCTPDLSPSDCRTCLSGAIGELPICCDRKLGARVLFPSCNIRYELFPFYRNAILPPKDGGGGGSYSRSEKPRFENNIRNEFLFPIYVRSLCTSDQSSPDLSFQNDTKTLLSHFSSNATRYDGLKNYYGDVNGKVYGLFMCRGDVPTDLCGQCIINATHQISSECQSSKEAIIWYRQCMLRYSNQNFLSKMETSPTYSELNITKASNQISEFGYQLSNNLNRLAKTTGYSDGRYKVESQNLSDVQSLYTLGQCTPDLSSVDCTNCLQDLIGKSIFWRYLGSGGGRVMYPSCNMRFELSQFYRIEGPKAQPPNSPLSPSGSTGKQSGRGRTVNLVAVLVPSIIIILVMLFSFCYYVQKRNARKRQMTILRENFGNESATVEPLQFDFVVIQAATNNFSEDNYIGKGGFGKVYKGILHNGQQIAVKRLSESSKQGVDEFKNEVLLIAKLQHKNLVAFVGFCLEEQEKILIYEYVPNKSLDYFLYGLEHFTLCFLLNPFLVSCIIYTCF* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2497 719 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 298 517 - -
Lja2g2497 719 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 26 275 - -
Lja2g2497 719 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 536 697 - -
Lja2g2497 719 ProSitePatterns Protein kinases ATP-binding region signature. 615 637 IPR017441 GO:0005524
Lja2g2497 719 Pfam Protein tyrosine and serine/threonine kinase 613 695 IPR001245 GO:0004672|GO:0006468
Lja2g2497 719 ProSiteProfiles Gnk2-homologous domain profile. 154 262 IPR002902 -
Lja2g2497 719 Pfam Salt stress response/antifungal 305 398 IPR002902 -
Lja2g2497 719 Pfam Salt stress response/antifungal 45 145 IPR002902 -
Lja2g2497 719 Pfam Salt stress response/antifungal 420 509 IPR002902 -
Lja2g2497 719 Pfam Salt stress response/antifungal 179 258 IPR002902 -
Lja2g2497 719 MobiDBLite consensus disorder prediction 520 539 - -
Lja2g2497 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 275 - -
Lja2g2497 719 SUPERFAMILY Protein kinase-like (PK-like) 584 701 IPR011009 -
Lja2g2497 719 Gene3D Phosphorylase Kinase; domain 1 567 684 - -
Lja2g2497 719 ProSiteProfiles Gnk2-homologous domain profile. 298 400 IPR002902 -
Lja2g2497 719 ProSiteProfiles Protein kinase domain profile. 609 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2497 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 298 517 - -
Lja2g2497 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 536 697 - -
Lja2g2497 719 Gene3D - 39 148 IPR038408 -
Lja2g2497 719 Gene3D - 162 262 IPR038408 -
Lja2g2497 719 Gene3D - 298 400 IPR038408 -
Lja2g2497 719 Gene3D - 406 513 IPR038408 -
Lja2g2497 719 ProSiteProfiles Gnk2-homologous domain profile. 41 148 IPR002902 -
Lja2g2497 719 ProSiteProfiles Gnk2-homologous domain profile. 406 513 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2497 Lja-Chr2 32186059 32189866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2497 298 698 Receptor kinase-like Gene Family AT4G05200 39.480 1.38e-85 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g2497 Stress-antifung 7.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2497 - - lja:Lj0g3v0332859.1 1147.11