Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2486 ATGGGTTGTTGTTCAGTGGTTTTGGTTTTTGTCTTCTCTCTTCTGGTTTTGCTTCTGAACCCACCATGTGTTTATGGGAATGATGAGCTTAGAGCACTCATGGATTTGAAAGCCACTTTGGACCCAGAAGGCCATTTTCTCTCTTCATGGAGCATGAGTGGCAACCCATGTGGTGGTTCCTTTGAAGGGGTGGCTTGCAATGAGAAGGGTCAGGTAGCAAACGTTTCTTTGCAGGGAAAAGGACTCTCTGGGAAGCTTTCACCAGCCATTGGTGGACTCAAGCACTTGACTGGACTCTACTTGCACTACAACTCTTTGTATGGAGAGATACCTCCAGAAATAGCAAACTTGACTGAGCTCAGTGACTTGTACTTGAATGTGAATCATTTATCTGGCGAAATCCCTCATGTGATCGGCAAGATGGAGAGTCTACAAGTTTTGCAGCTTTGTTACAATCAGTTAACAGGAAGCATACCTACACAACTTGGCGACTTGAAAAAGCTTAATGTTCTTGCTCTGCAGTCAAACCAGTTAACCGGAGCGATCCCAGCTAGTCTAGGTGGTTTGGGAACGTTGATGAGGCTAGATTTGAGCTCTAATCATCTCTTTGGTTCCATCCCCACAAGACTAGCTGATGTTCCTTCACTGCAAATTCTGGATGTTCACAACAATACTCTCTCTGGGAATATTCCCCCTGCTCTAAAGAGACTAGATGATGGATTTGTGTTTGAAGACAATTTGGGGCTGTGCGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAATGCTTCAGATCATGTCAATCCAAGTCGACCTGAACCTTACGGAGCAGGAGTTCCTGGTCTGTCAAGGGACATCCCAGAAACTGCAAATGTAAAGATGCCTTGCAACACAACTCAGTGCAAAAATTCAACAAAGTCCAAACAAGCAACGTCTATTACTATTGGCACAGTTCTGGTTACAATTGCTGTATCAGCAATTGCTATTCTGACCTTCACTATGTATCGTCGGCGGAAGCAAAAGCTTGGAAGTGCTTTTGATATCTCTGAAAGCCGTCTAAGTACTGATCAAGCCAAGGGTATATACAGGAAAAATGGATCTCCTTTAGTCAGCCTTGAGTATTCTAATGGATGGGACCCTTTAGCTGATAGCAGAAATTTCAACGGGGATAAGCAAGATATTTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTTTCAGAGTTGAATCTTTTGGGGAAGAGTAACTTCAGTGCAACATATAAAGGAGTTTTAAGAGATGGGTCTATTGTTGCTGTTAAGAGCATCAGTAAAACTAGTTGCAAATCGGATGAGGCAGAGTTTTTGAAGGGCTTAAACATTTTGACCTCGCTTAGGCAAGAGAATTTGGTGAGGCTGAGAGGATTCTGTTGTTCAAGGGGCCGGGGTGAATGCTTCCTGATCTATGATTTTGTTTCTAATGGAAATCTGTCGCGCTACCTTGATAGGAAGGAAGGTGAAGGTGAAGTTCTTGAATGGTCAACTAGAGTTTCCATAGTGAAAGGAATTGCAAAAGGTATAGCATATCTACATGCCCACAAAGCAAACAAACCCTCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATCAGCGTCATAATCCGTTGCTTACAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTTTCTGCACTGAAGGGCAGTGCAGCCAAGGGTTACCTGGCTCCGGAATACACCACCACTGGCCGGTTCACCGAGAAAAGCGATGTTTATGCTTTCGGGGTGCTTCTTTTCCAAGTCCTCACAGGGAAGCAGAAGATCACCAGCTCAATGCGCCTTGCCGCAGAGTCCCTCAGGTTCCAAGAACTTATTGACCCGAATCTTCATGGCAGATACTTCGAGTACGAGGCAGCCAAACTAGCTAGAATGGCTTTGCTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACCATGGAAGCCATTGTTCAAGAAGTGGGTAATTGTAGTAGCTGTCTCTGA 2052 0.4459 MGCCSVVLVFVFSLLVLLLNPPCVYGNDELRALMDLKATLDPEGHFLSSWSMSGNPCGGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIGGLKHLTGLYLHYNSLYGEIPPEIANLTELSDLYLNVNHLSGEIPHVIGKMESLQVLQLCYNQLTGSIPTQLGDLKKLNVLALQSNQLTGAIPASLGGLGTLMRLDLSSNHLFGSIPTRLADVPSLQILDVHNNTLSGNIPPALKRLDDGFVFEDNLGLCGVGFSSLKACNASDHVNPSRPEPYGAGVPGLSRDIPETANVKMPCNTTQCKNSTKSKQATSITIGTVLVTIAVSAIAILTFTMYRRRKQKLGSAFDISESRLSTDQAKGIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDIFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAVKSISKTSCKSDEAEFLKGLNILTSLRQENLVRLRGFCCSRGRGECFLIYDFVSNGNLSRYLDRKEGEGEVLEWSTRVSIVKGIAKGIAYLHAHKANKPSLVHQNISAEKVLIDQRHNPLLTDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQVLTGKQKITSSMRLAAESLRFQELIDPNLHGRYFEYEAAKLARMALLCSHDSPFERPTMEAIVQEVGNCSSCL* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2486 683 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 681 - -
Lja2g2486 683 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
Lja2g2486 683 Gene3D Ribonuclease Inhibitor 177 242 IPR032675 -
Lja2g2486 683 SUPERFAMILY L domain-like 25 235 - -
Lja2g2486 683 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lja2g2486 683 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Lja2g2486 683 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Lja2g2486 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2486 683 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 681 - -
Lja2g2486 683 SUPERFAMILY Protein kinase-like (PK-like) 389 675 IPR011009 -
Lja2g2486 683 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Lja2g2486 683 Gene3D Phosphorylase Kinase; domain 1 382 489 - -
Lja2g2486 683 SMART serkin_6 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2486 Lja-Chr2 31748689 31752729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2486 4 524 Miscellaneous Gene Families AT4G22730 55.932 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lja2g2486 PK_Tyr_Ser-Thr 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2486 - - gmx:100789253 1199.11