Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2478 ATGAAGAAGATCTTTTCATCAGAGACCATGGACATCCCCGACGGCGTGAGCATCAAGGTTGAAGGCCCTCGCGGGGATTTCCAGCTCATCACCGATGAGAACGGCAAGAAAAAGCTCAAGATCGAGGCCTGGTTCGGTACCCACAAGATGAGGCTCGTCTATGCCCATTATTTTCCCATCAATGCTAGCATCACTAATCACAACAAGGGCATCAAGATCCATATGCTGATCATTTTTTATTTTTTATTAACTTTGAACTGTGCATTTGTGTCAATAATGAAAGTGGATATGCTTGATGGAGTTTCCATTGTGCGATCTGAGAAAGTGAAGGATGAGTTGGTTTTCGATGGAAATGACATTGAGCTTGTTTCTAGGTCATGTGCCCTTATCAATCAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGCTCGCTTGCATGTTCAACTTGCCATGTTATAG 477 0.4256 MKKIFSSETMDIPDGVSIKVEGPRGDFQLITDENGKKKLKIEAWFGTHKMRLVYAHYFPINASITNHNKGIKIHMLIIFYFLLTLNCAFVSIMKVDMLDGVSIVRSEKVKDELVFDGNDIELVSRSCALINQNKDIRKFLDGIYVSEKARLHVQLAML* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2478 158 PANTHER RIBOSOMAL PROTEIN L6-RELATED 1 49 - -
Lja2g2478 158 Gene3D - 46 153 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja2g2478 158 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 48 152 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja2g2478 158 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 49 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja2g2478 158 PANTHER RIBOSOMAL PROTEIN L6-RELATED 48 152 - -
Lja2g2478 158 SUPERFAMILY Ribosomal protein L6 49 148 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2478 Lja-Chr2 31481052 31481914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2478 1 151 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 52.736 7.05e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2478 K02940 - ini:109175062 179.104