Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2476 ATGCTACGTGGTAAACTTGCATGCTCGAGTGGTTCCGATTTCAAGACCGATGTTATTACAGCTAATGAGGGCGAGGATATTGCTATGAAGATCATGTCACTTTCTATAAGAAGACCCCGTGCTATATGCATTCTCCATGCAAAGGGTACAATATCAAATGTCACAATTCGTCCCTCTAGTTCTTCTGGTGGCACTTCGACCTATGAGGGAAATTTCGAGCTTATACACTTGAACGGTTCATTTGTGCCTATTGAGATTGGATTATCAAAAAAAAGATGTGGTGGAATAAGCATCAGTTTTGAAGGTCCTGATCGTCAAGTTATAGGGGGTGAACTTGCTGGTTCGCTAGTAGCTGGAGGTCGTGTGGAGGTTATGATTGGCAGTTTTAAAGTCAACGACATTTCTGCTCTTAGTAATCGTGGAGGCTCTGTGAACTTATCTTCTGATTAG 450 0.4222 MLRGKLACSSGSDFKTDVITANEGEDIAMKIMSLSIRRPRAICILHAKGTISNVTIRPSSSSGGTSTYEGNFELIHLNGSFVPIEIGLSKKRCGGISISFEGPDRQVIGGELAGSLVAGGRVEVMIGSFKVNDISALSNRGGSVNLSSD* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2476 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 5 130 IPR039605 GO:0003680
Lja2g2476 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 5 130 - -
Lja2g2476 149 Pfam Plants and Prokaryotes Conserved (PCC) domain 18 130 IPR005175 -
Lja2g2476 149 Gene3D - 15 144 - -
Lja2g2476 149 SUPERFAMILY AF0104/ALDC/Ptd012-like 12 130 - -
Lja2g2476 149 CDD DUF296 18 129 IPR005175 -
Lja2g2476 149 ProSiteProfiles PPC domain profile profile. 11 149 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2476 Lja-Chr2 31436600 31439436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2476 7 129 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.846 6.66e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2476 - - lja:Lj0g3v0159399.1 234.187