Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2464 ATGGCTCCAGCACTTTGTGCCAATGGTTGTGGTTTCTACAGCTCTGCTGCAACCAACAATTTTTGTTCAAAATGCTACCAAGATCACTTGAAGGAACACTGTACTTTTGAGACGACTCCTATTGATGATTTGGGTGATATCTGTGCTAGTCTTACTGCTATTAGAATTCGAGTCACAGAGACCAAGATGGAGACAGAGTCTACAACTACAAGCATAAGGAAGAAGACAAATAGGTGCAAGAGTTGCAACAAAAAAGTTGGACTAACGGGGTTCGAGTGTCGATGTGGGGATGTGTTTTGCGGTAGACATAGGTATCCAGAAGAACACTCATGTGAAGTAGATTTTAAAAAGATAGGTCGCCAAGTTTTGGCGAAACAAAATCTCAAATGCATTGGTGATAAATTAGAATATAGGGTTTAG 420 0.4048 MAPALCANGCGFYSSAATNNFCSKCYQDHLKEHCTFETTPIDDLGDICASLTAIRIRVTETKMETESTTTSIRKKTNRCKSCNKKVGLTGFECRCGDVFCGRHRYPEEHSCEVDFKKIGRQVLAKQNLKCIGDKLEYRV* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2464 139 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Lja2g2464 139 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 3 139 - -
Lja2g2464 139 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Lja2g2464 139 SUPERFAMILY AN1-like Zinc finger 64 133 IPR035896 -
Lja2g2464 139 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Lja2g2464 139 Gene3D - 55 132 IPR035896 -
Lja2g2464 139 ProSiteProfiles Zinc finger AN1-type profile. 73 119 IPR000058 GO:0008270
Lja2g2464 139 Pfam AN1-like Zinc finger 79 114 IPR000058 GO:0008270
Lja2g2464 139 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 33 - -
Lja2g2464 139 SMART AN1_Zf_4 79 116 IPR000058 GO:0008270
Lja2g2464 139 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 139 - -
Lja2g2464 139 Gene3D - 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2464 Lja-Chr2 31070854 31071273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2464 5 136 C2H2 Transcription Factor Family AT3G52800 37.013 1.25e-25 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2464 - - lja:Lj1g3v3833900.1 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2464 2 31070854 31071273 Lja2g2464 2 31070854 31071273 ECH