Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2450 ATGAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCTGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCTCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACACGTCGAAGAGGCGGAGAAGATTGGATTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCATGCATTTTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCCCTACACTTGTCACTCACCAAGAATCCCTTGAAGCAAAGGTTAACGAGACCAAGGCTATGGTCAAATTTCAGCTAAAAAAGGTGCTCTGCATGGGAGTCGCCGTGGGTAATGTTAGCATGGAGGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTAAGTACACTCTTAATATTTGAGTTAAACCATTGCTTTCTGTTTTCAATTTAG 651 0.424 MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLIFELNHCFLFSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2450 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 202 - -
Lja2g2450 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 202 - -
Lja2g2450 216 CDD Ribosomal_L1 9 205 IPR028364 -
Lja2g2450 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 207 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lja2g2450 216 Pfam Ribosomal protein L1p/L10e family 22 205 IPR028364 -
Lja2g2450 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Lja2g2450 216 SUPERFAMILY Ribosomal protein L1 3 205 IPR023674 -
Lja2g2450 216 Gene3D - 21 205 - -
Lja2g2450 216 Gene3D - 65 154 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2450 Lja-Chr2 30651282 30653207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2450 1 205 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 87.805 1.62e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2450 K02865 - gmx:100305550 367.466