Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2446 ATGCCTTCTCTACTCCCTCTCTCCAACGGCGCCACCGCCATGAGCGAGAGTCCCAAAGACAAGTCGAAGAAGAAGAAGGACAAGAAGAAGAGCGAAACCGTCCAAATCGACGCCGATTTGGAGGTGACGAGCTCCAAGAGCAAGAGCAAGAAGAGCAGCTCGAAGAAGCGGAAGAAGAGTTCCGATGAGGAGGAGGAGGAGGAGCAGGAGAGGAGTGAGACTAGCTCTGAGCTCGTGGAGCCGAAGGCGAGTAAGAAGATGAAGAAGAAGATTAAGTTTGATGAGGATGGTGAAGAGGAGGAGGAAGAGGTGGTGGTTGAGAAGAAGAAGGAGGATCCGAATGCGGTTTCGAGGTTCAGGATTTCGGAGCCGTTGAGGGCGATTCTGAAGCAGAAGGGGATTGAATCGCTGTTCCCCATTCAGGCTATGACGTTTGATACCATTCTCGATGGTGCTGATATGGTTGGTCGCGCTCGTACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATACTTGAGTCTTTGACAAATGGTCCGGGCAAAGTGGCAAGAAAGACTGGTTATGGGAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCACTCAGGTGTTTGCTGATTTTGAAGTTTATGGTTCGGCTATGGGATTGAATGCTTGCTGTTTATATGGTGGTGCTCCATATCATAGTCAAGAAAGTAATCTCAAGCGAGGTGTTGATATTGTTATTGGAACACCGGGTCGCATAAAGGACCATATTGAGAGGCAAAACCTTGACCTGAGCAAACTAAGGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTCGAACGCATTCTAGGTGAGGTAGATGATGTTAATAGAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGTCTGGGTTAAGCAGATTTCTACAAAATTTCTGAAACCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTAGTAGTTCTGCCAGGGCGCAGCTTATCCCTGACATTATTCGCTGTTACAGCAGTGGAGGCCGAACCATTATTTTTACTGAGAAAAAAGAGTCTGCTTCTGAGCTTGCGGGCTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGGGAGATTACGCTGAAAGGTTTTAGGTCTGGGAAATTCATGACATTGGTGGCTACAAATGTGGCTGCTAGGGGTCTGGATATTAACGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCATATATCCATCGATCTGGGCGCACAGGAAGAGCCGGCAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAAGTCAAATTTTTCTAAAATAGAAAGAGAATCGGGTGTGAAGTTTGAACACATATCTGCTCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAATTGATTATCCAAGTTTCTGATAGCGTGGTTCCTGCATTCAAGTCTGTTGCTGAGGACCTTCTGAAGAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGATATAAAGAAAAGATCACTGCTGACTTCCATGGAGAATTATGTTACATTACTTCTCGAGACTGGAAGATCTATCCACACCCCATCCTATGCTTTTGGAATCTTGAGGAGATTTGTGCCTGAGGAGAAGGTTGATGGTGTGCAGGGTCTTTCTCTCACTGCAGATGGAACTGGTGCTGTGTTTGATGTACCAGCCAATGATTTAGATGCATTCCTTGCGGGTCAGAAGAATGCTGGTAATGTAAGCCTAGAGGAGGTAAAACTATTGCCACGTTTGCAAGAAAGGGACCAATCAAGAGGGGGCAGAGGGGGTTTTGGAGGTGGCGGGAGTAGGTTTGGGAGAGGTGGCCGTGGGTTTTCAAGTGGTGGTAGAGGTTATGGAGGCCGAGGTGGAGGTGGTAGGAGATGGTAA 2061 0.4702 MPSLLPLSNGATAMSESPKDKSKKKKDKKKSETVQIDADLEVTSSKSKSKKSSSKKRKKSSDEEEEEEQERSETSSELVEPKASKKMKKKIKFDEDGEEEEEEVVVEKKKEDPNAVSRFRISEPLRAILKQKGIESLFPIQAMTFDTILDGADMVGRARTGQGKTLAFVLPILESLTNGPGKVARKTGYGRSPSVLVLLPTRELATQVFADFEVYGSAMGLNACCLYGGAPYHSQESNLKRGVDIVIGTPGRIKDHIERQNLDLSKLRFRVLDEADEMLRMGFVEDVERILGEVDDVNRVQTLLFSATLPVWVKQISTKFLKPDKKTADLVGNEKMKASTNVRHIVLPCSSSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSNFSKIERESGVKFEHISAPQPDDIAKAVGGEAAELIIQVSDSVVPAFKSVAEDLLKNSGLSAVELLAKALAKAVGFTDIKKRSLLTSMENYVTLLLETGRSIHTPSYAFGILRRFVPEEKVDGVQGLSLTADGTGAVFDVPANDLDAFLAGQKNAGNVSLEEVKLLPRLQERDQSRGGRGGFGGGGSRFGRGGRGFSSGGRGYGGRGGGGRRW* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2446 686 SMART helicmild6 382 459 IPR001650 -
Lja2g2446 686 MobiDBLite consensus disorder prediction 17 36 - -
Lja2g2446 686 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 498 IPR001650 -
Lja2g2446 686 MobiDBLite consensus disorder prediction 1 106 - -
Lja2g2446 686 SMART ultradead3 133 345 IPR014001 -
Lja2g2446 686 MobiDBLite consensus disorder prediction 1 16 - -
Lja2g2446 686 CDD GUCT_RH7_like 555 640 - -
Lja2g2446 686 Gene3D - 566 636 - -
Lja2g2446 686 MobiDBLite consensus disorder prediction 642 686 - -
Lja2g2446 686 Gene3D - 339 565 IPR027417 -
Lja2g2446 686 SUPERFAMILY RNA-binding domain, RBD 552 633 IPR035979 GO:0003676
Lja2g2446 686 MobiDBLite consensus disorder prediction 74 95 - -
Lja2g2446 686 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Lja2g2446 686 Pfam DEAD/DEAH box helicase 138 315 IPR011545 GO:0003676|GO:0005524
Lja2g2446 686 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 677 - -
Lja2g2446 686 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 45 677 - -
Lja2g2446 686 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 327 IPR014001 -
Lja2g2446 686 CDD DEADc 125 322 - -
Lja2g2446 686 Pfam GUCT (NUC152) domain 548 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lja2g2446 686 CDD SF2_C_DEAD 342 468 - -
Lja2g2446 686 Pfam Helicase conserved C-terminal domain 360 459 IPR001650 -
Lja2g2446 686 Gene3D - 56 327 IPR027417 -
Lja2g2446 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2446 Lja-Chr2 30552400 30556916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2446 99 465 Eukaryotic Initiation Factors Gene Family AT1G72730 29.919 7.03e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2446 K16911 - jre:108998595 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2446 2 30552400 30556916 Lja2g2446 2 30552400 30556916 ECH