Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2444 ATGGATTCCTACAAAATTTTCTTACTCTTTATCATTGTTAACTTATTCTGTTTCGCAATTAATGAGGCACAAGAGGACCCTTTTTATCTATGCCAAGTTTGTTCCAGCGAAAAAACAAATGCCAATACCTCTTTCCAATTGACCCTCACAAAGCTCCTCTCTTCCCTATCATCACATGCCACCGACAACACCCAATTCTATAACACCACTTCCCCTGGAAACAACCCTTCTGACTCAATCTCTGTCATGTTCATGTGCAGGGGTGATGTCTCTTCTAATCTCTGCCAACTATGCATCGACACTGCAAGGGGGAGACTGTCAACACAGTGCCCCTTGTCAAAAGAAGCTAATATTTGGTATGAAGAGTGCATGGTTAGGTATTCCACCACCTCTTTGTTCTCCACTATGGTAAAAGATACTAGCTTTAAAATGCATAACAGCGGCAATGTCTCAAACCCAGCAAGCTTCAAGCGTTTATTGTTAGACACCATCAACAAAACTGTAGATTTAGCAGCCCTTCCACCTATTGGTGACAAGAAGTTTGCCACAACGGAAGTACCGTTCACAGGACATGAGACCCTTTATATTCTAGCTCAGTGCACACCAGATTTGTCACCCCTTGATTGCAGAACATGTCTCAGTGCAATGATAGGGGGTCTTCCAAACTGTTGTGAAGGAAAGGTTGGAGGTAGAGTTGCATCTCCTAGCTGTAATATCAGGTATGAACTCTACCCTTTCTTCTACCACCCCAAAGTTTCATCATCATCTGTGCTCGCCCTTTCACCGAACACCTCGCGTGCAGATTCACCAGACCCGACTTACCTCTCCCACAACTGCTCAACCAACAAAAACTTCACTGCCAATAGCACTTTCCAAACACACCTCACCACCCTCCTCTCTTACTTGTCTTCCAACTCCACCAACACCAAATTTCATAAAGCTGATGTGGGTGGCACAGTTTATGGCCTCTTCATGTGCCAATTTGACCTCCCCCCTCACCTCTGTCAAAAGTGTGTCTCTGACGCAATTCATCAAACACCTTCAGTGTGTGGCACAGCCCAAGAGGCTGTGATATGGTACACTCACTGCATGTTTCGGTACTCAAATGGGAATTTCTTCTACAAAGTGGACACAAGTTCTGTGTATTCAGATTTGAATATTACCAGTAACAATACCTCTATCTACAAAATGGAACAGAACATGATTGTTAGAATAGCAAAGACAGTAGATAGTGCAGCAATACAAGCAGGGGACAGTGATGAGAGACATGGAACAGTGTCATCCAAACTGAATGATGGGCTAACGTTGTATGCTCTTGCTCAGTGTACACATGATTTGGCCATCAATGATTGCAAGGGTTGTCTTGGAGTTGTGATTGGAGAAGCAATTCCATGGACTTATTTGGGAAGCATAGGTGGAAGAGTTATGTATCCTAGCTGCAGTCTTAGGTTTGAGTTGTTCTTATTTTACAAGGAGCCTAATAATTCTCTATCCCCAAATGGTGTGCCATCCTCCGCCCGAGAAAAAAATCATGGTCAATTGCGAACAATTGTCTTGATTGTTGTTGGCGTGATTATTATTTTGATGGCCGCCTCTTTTGTTGGCTACTGCATGCTAAGGAGAAAAGCCAAAAAAAGTTATACGACCATTATCAAAGAAAATCTTTGTGAAGAATTTGCCACTTTAGAGCCGTTGCACTTTGATTTGGCTATGATTAAAGCAGCAACCAACAACTTTGCAAATGAGAATAAGATTGGTAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTTTTCTTGATGGGCGACAAATAGCTGTAAAGAGATTGTCAAGTAGTTCTACACAAGGTGCTAACGAGTTCAAGAATGAAATTCTATTGATAGCTAAGCTTCAACACCGAAACTTAGTGGCCTTCATTGGATTTTGCCTTGAAGAAGAAGAGAAAATACTTATTTACGAATATGTGACAAATAGGAGTCTTGACTACTTTTTATTTGATTCTCAGCAGCCAAAGCCTCTTAGTTGGGTTGAACGTTACAGTATTATAAAAGGGATTGCTCAAGGAATTACTTATTTACATGAACATTCCCGACTCAAAGTTATTCATCGTGATCTCAAACCAAGTAATGTTCTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTAGCTAGAATTGTTGAAATAAACCAAGATCAAGAAAGTACACATAGAATTGTTGGGACATATGGTTATATGTCTCCTGAGTATGCTATGCTTGGACATTTTTCTGAGAAATCGGATGTTTTCAGTTTTGGAGTCATGATTTTAGAGATTATTACTGGAAAAAAGAATCTAAGTTCTTATGAATTACATCGTGTTATGAACGGCCTTCTGAGCTATGTTTGGAGACAATGGAAGGATCAAGCACCTTTAACTATCTTGGACCCAACTATCAAAGAAGCATTTTTTGAATTTGAAGTCATTAAATGCATTCATATTGGTTTATTGTGTGTGCAAGAAAACCCTGATGCTAGACCGACAATGACAACAATTGTTTCATATCTTAGCAGTCATTCTATTGAATTACCAACTCCACAAGAACCGGCATTTTCCTCACGTAGAATGTCTGCACAACTAACTGCTCAAGAATTAAGTTCCTTTCAATCGATCAAGACTTCTACAATATTCTCTACCAATGAAATGCCTATAAGTGAATTTATTCCTCGATAG 2718 0.3996 MDSYKIFLLFIIVNLFCFAINEAQEDPFYLCQVCSSEKTNANTSFQLTLTKLLSSLSSHATDNTQFYNTTSPGNNPSDSISVMFMCRGDVSSNLCQLCIDTARGRLSTQCPLSKEANIWYEECMVRYSTTSLFSTMVKDTSFKMHNSGNVSNPASFKRLLLDTINKTVDLAALPPIGDKKFATTEVPFTGHETLYILAQCTPDLSPLDCRTCLSAMIGGLPNCCEGKVGGRVASPSCNIRYELYPFFYHPKVSSSSVLALSPNTSRADSPDPTYLSHNCSTNKNFTANSTFQTHLTTLLSYLSSNSTNTKFHKADVGGTVYGLFMCQFDLPPHLCQKCVSDAIHQTPSVCGTAQEAVIWYTHCMFRYSNGNFFYKVDTSSVYSDLNITSNNTSIYKMEQNMIVRIAKTVDSAAIQAGDSDERHGTVSSKLNDGLTLYALAQCTHDLAINDCKGCLGVVIGEAIPWTYLGSIGGRVMYPSCSLRFELFLFYKEPNNSLSPNGVPSSAREKNHGQLRTIVLIVVGVIIILMAASFVGYCMLRRKAKKSYTTIIKENLCEEFATLEPLHFDLAMIKAATNNFANENKIGKGGFGEVYKGIFLDGRQIAVKRLSSSSTQGANEFKNEILLIAKLQHRNLVAFIGFCLEEEEKILIYEYVTNRSLDYFLFDSQQPKPLSWVERYSIIKGIAQGITYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQESTHRIVGTYGYMSPEYAMLGHFSEKSDVFSFGVMILEIITGKKNLSSYELHRVMNGLLSYVWRQWKDQAPLTILDPTIKEAFFEFEVIKCIHIGLLCVQENPDARPTMTTIVSYLSSHSIELPTPQEPAFSSRRMSAQLTAQELSSFQSIKTSTIFSTNEMPISEFIPR* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2444 905 Gene3D Phosphorylase Kinase; domain 1 539 654 - -
Lja2g2444 905 ProSiteProfiles Protein kinase domain profile. 579 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2444 905 Gene3D Transferase(Phosphotransferase) domain 1 655 862 - -
Lja2g2444 905 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 253 - -
Lja2g2444 905 SMART serkin_6 579 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2444 905 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 507 895 - -
Lja2g2444 905 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 265 498 - -
Lja2g2444 905 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 507 895 - -
Lja2g2444 905 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 265 498 - -
Lja2g2444 905 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Lja2g2444 905 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Lja2g2444 905 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Lja2g2444 905 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 253 - -
Lja2g2444 905 ProSiteProfiles Gnk2-homologous domain profile. 273 372 IPR002902 -
Lja2g2444 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Lja2g2444 905 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Lja2g2444 905 Pfam Salt stress response/antifungal 425 485 IPR002902 -
Lja2g2444 905 Pfam Salt stress response/antifungal 149 244 IPR002902 -
Lja2g2444 905 Pfam Salt stress response/antifungal 279 369 IPR002902 -
Lja2g2444 905 CDD STKc_IRAK 585 851 - -
Lja2g2444 905 ProSiteProfiles Gnk2-homologous domain profile. 383 489 IPR002902 -
Lja2g2444 905 SUPERFAMILY Protein kinase-like (PK-like) 563 887 IPR011009 -
Lja2g2444 905 Gene3D - 271 372 IPR038408 -
Lja2g2444 905 Gene3D - 27 131 IPR038408 -
Lja2g2444 905 Gene3D - 379 489 IPR038408 -
Lja2g2444 905 Gene3D - 138 246 IPR038408 -
Lja2g2444 905 Pfam Protein tyrosine and serine/threonine kinase 582 850 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2444 Lja-Chr2 30537951 30543633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2444 271 871 Receptor kinase-like Gene Family AT4G05200 43.269 1.67e-169 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g2444 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2444 - - lja:Lj0g3v0245009.1 1474.53