Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2443 ATGTTTCATTCCATAGTAGTGCTCACAAACTTTGACAGACCCAATAACCCATCCATGGCATCGTTTAACACTCTCTACCTCTTCATCCTTGCTAGCTTCCTTTGTTTTTCAGTCACTGAGGCACAGTACAACCCTTTTTATCTACACCAAGTCTGTTCCGGCAACAGAACCATTGCAAATACCTCCTTTAAATTTGACCTCACAACCCTCTTTTCTTACCTATCATCCAATGCTACAAGCAATACACAATTCTACAACACCACAATCACTGGAAACAACCCCTCAAACTCAATCTATGGCATGTTCATGTGCCGCGGCGATGTCGGCTCTCACCTCTGTCAACAATGTGCTGTCAATGCAACCCAGCTTCTATCATTTGAATGCCCCTTATCCCAAGAAGCTTTCATTTGGTATGAAGAATGCATGGTTCGATACTCCAACCACCCTTTCTTCTCCACCATGGCCACTGAGCCTTCTTCTCACTTCACAAACCTCGCCAACATCTCAAACCCAGAAACCTTCAATCCTCTACTGTCCACAGCCATGAACCAAACAGCAAATGAAGCAGCCAACCACCCAATTGATGACAAGAAGTTTGCAACAAAGGAAGTCACCATCTCAGAATCACAAACCCTTTACATTCTAGCTCAATGCACACCAGATTTATCACCCCATGATTGCAAAACATGTCTCAGTAGAGCAATAACTGAAATCCCACTATGCTGTGAAGGAAAACTAGGAGGAAGAATTCTATACCCAAGCTGCAACATTCGCTACGAACTCTACCCTTTCTACCGCTCCATTATCGCCCCTTCACCTCTCTACATCCCTGCATCAAACACCTTGCGTGCAGATTCAAACCTCACAGATGACCCTATCTACCTCTCCCAAAATTGCTCTAACAACCAAACCTTCACCACCAACACCCCTTTCCAAACCTATCTCACCACCCTCCTCTCCTACTTGTCCGCCAACGCCACCGCCGGCAACAAGTTCCACAAAGCCAACGTCTCATACATGGTATACGGCCTCTTCATGTGCCGCGGCGACCTCCCCTCCCGCCTATGCTCACATTGCGTCCAACAAGCCACATCCCGAATAGCCTCCGAATGCCGGTCCTCCCCGGAGGCCATAATTTGGTACAGCCACTGCACGGTTCGATACTCGAACCGGCATCGAACCGGCTTTTCTTCTCGGAAGTGGACAAGACTGCTGTTTGAGACTGAGGACAGTGATGAGAGGTATGCAACGAAGGTGATGAGGTTGAATGATTTGCAGATGCTGTATACTCTTGGACAGTGTACGCAGGATTTGTCGAGCGATGATTGCACGCGGTGTTTGGCGGATGTGATGGGAACCGCGATACCGTGGTCGCGGTTGGGGAGTGTAGGGGGGAGAGTGGTGTATCCTAGCTGCAATTTGAGGTTTGAACTGTTTCAGTTTTATAGAGATGGTGGTGATGAAGCACCGCCGCCAACTGCAGGTACTATCCAGTTGCGAATGATATTTATTGGTGTACCCACATTTATCTCAATGATACTTTTCTCTTTTGGCTACTATCTACAAAAGAGAACAACAAGAAGGAGTTGCAAAACCATTCTTAGGGAGAACTTTGGTCATGAAAGTGGCACTTTTGGGTCATTGCAATTCAATTTGGCTGCAATTCGAATAGCAACAAAGAACTTTTCGTATGACAATAGGATTGGAAGAGGAGGATTTGGAGAAGTTTACAAGGGAATCCTTGATGGGCGACAAGTAGCAATAAAAAGACTTTCAAGAGGCTCTAGGCAAGGTGCAAGTGAATTCAAGAATGAAGTTTCATTAATAGCCAAGCTTCAACATAGAAATCTTGTGACCTTGATCGGTTTTTGTTTAGAAGAACAAGAGAAAGTACTTATTTACGAATATGTGCCAAACAAGAGCCTTGATTATTTTTTATTTGATTCCCAACGACAAAAGTCATTAAGTTGGTTGGAACGTTACAATATTATAGGAGGAATTGCTCGGGAAATTCTTTATTTACATGAACATTCTCGACTCAAAGTTATACATCGTGATCTGAAACCTAGCAATGTTCTCCTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTAGCTAGAATTATTGAGATAAATCAAGACCAGGGAGATACAAGTAGAATTGTTGGAACGCTTGGTTATATGTCTCCAGAATATGCAATGTTTGGGCAATATTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAGATTAGTACAGGGAAAAAGAATCTGAGTTCTTATGAGTCACATCGATTTGTTGAAGGCCTTCTTAGTTATGTTTGGAGACAATGGAAGTTCCAGACATCATTACCCATATTAGATTCAAATATTGTGGAAAATTATTCAGAAAATGAAGTCAATAAGTGCATTCAAATTGCTTTATTATGTGTGCAACAAAACCCTGATGATAGACCTACGATGACATCAATTGTTTCATATCTTAATAGTCTTTTAATTGCGTTACCAACTCCAAAAGAACCTGCATTTTTCTTACACAATGTCATGGATCTAGAAGAAGTTGCACATGAATCAAGTTCGAATCAGTCTACCAACAGTTCTAAACCATTCTCTATGAATGAAATGCCTATAAGTGAATTTCTTCCTCGATAG 2667 0.4226 MFHSIVVLTNFDRPNNPSMASFNTLYLFILASFLCFSVTEAQYNPFYLHQVCSGNRTIANTSFKFDLTTLFSYLSSNATSNTQFYNTTITGNNPSNSIYGMFMCRGDVGSHLCQQCAVNATQLLSFECPLSQEAFIWYEECMVRYSNHPFFSTMATEPSSHFTNLANISNPETFNPLLSTAMNQTANEAANHPIDDKKFATKEVTISESQTLYILAQCTPDLSPHDCKTCLSRAITEIPLCCEGKLGGRILYPSCNIRYELYPFYRSIIAPSPLYIPASNTLRADSNLTDDPIYLSQNCSNNQTFTTNTPFQTYLTTLLSYLSANATAGNKFHKANVSYMVYGLFMCRGDLPSRLCSHCVQQATSRIASECRSSPEAIIWYSHCTVRYSNRHRTGFSSRKWTRLLFETEDSDERYATKVMRLNDLQMLYTLGQCTQDLSSDDCTRCLADVMGTAIPWSRLGSVGGRVVYPSCNLRFELFQFYRDGGDEAPPPTAGTIQLRMIFIGVPTFISMILFSFGYYLQKRTTRRSCKTILRENFGHESGTFGSLQFNLAAIRIATKNFSYDNRIGRGGFGEVYKGILDGRQVAIKRLSRGSRQGASEFKNEVSLIAKLQHRNLVTLIGFCLEEQEKVLIYEYVPNKSLDYFLFDSQRQKSLSWLERYNIIGGIAREILYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIIEINQDQGDTSRIVGTLGYMSPEYAMFGQYSEKSDVFSFGVMVLEISTGKKNLSSYESHRFVEGLLSYVWRQWKFQTSLPILDSNIVENYSENEVNKCIQIALLCVQQNPDDRPTMTSIVSYLNSLLIALPTPKEPAFFLHNVMDLEEVAHESSSNQSTNSSKPFSMNEMPISEFLPR* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2443 888 ProSiteProfiles Gnk2-homologous domain profile. 156 264 IPR002902 -
Lja2g2443 888 MobiDBLite consensus disorder prediction 861 888 - -
Lja2g2443 888 MobiDBLite consensus disorder prediction 861 878 - -
Lja2g2443 888 Gene3D - 292 392 IPR038408 -
Lja2g2443 888 Gene3D - 156 264 IPR038408 -
Lja2g2443 888 Gene3D - 45 150 IPR038408 -
Lja2g2443 888 Gene3D - 399 481 IPR038408 -
Lja2g2443 888 CDD STKc_IRAK 568 836 - -
Lja2g2443 888 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 284 486 - -
Lja2g2443 888 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 501 875 - -
Lja2g2443 888 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 33 273 - -
Lja2g2443 888 Gene3D Phosphorylase Kinase; domain 1 524 636 - -
Lja2g2443 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Lja2g2443 888 Pfam Protein kinase domain 564 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2443 888 SUPERFAMILY Protein kinase-like (PK-like) 546 868 IPR011009 -
Lja2g2443 888 ProSiteProfiles Gnk2-homologous domain profile. 293 393 IPR002902 -
Lja2g2443 888 ProSiteProfiles Gnk2-homologous domain profile. 45 150 IPR002902 -
Lja2g2443 888 ProSiteProfiles Protein kinase domain profile. 562 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2443 888 ProSitePatterns Protein kinases ATP-binding region signature. 568 589 IPR017441 GO:0005524
Lja2g2443 888 Gene3D Transferase(Phosphotransferase) domain 1 637 840 - -
Lja2g2443 888 Pfam Salt stress response/antifungal 299 390 IPR002902 -
Lja2g2443 888 Pfam Salt stress response/antifungal 52 147 IPR002902 -
Lja2g2443 888 Pfam Salt stress response/antifungal 423 477 IPR002902 -
Lja2g2443 888 Pfam Salt stress response/antifungal 167 262 IPR002902 -
Lja2g2443 888 SMART serkin_6 562 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2443 888 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 273 - -
Lja2g2443 888 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 284 486 - -
Lja2g2443 888 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 501 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2443 Lja-Chr2 30517164 30522725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2443 288 888 Receptor kinase-like Gene Family AT4G05200 42.922 4.78e-167 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g2443 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2443 - - gmx:100806048 1082.78