Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2442 ATGAAATCATTCTATTCTATATATCCAGCCACACACGGCTGTGAACAGAAGATCCAATATAACACATACATGCCTTCCTATAACATTCTTTTCTTCTTCATCCTGATTAGCTTCCTCAGGTTTCCACCTACCAAGACAGAGGACAGCATTGCTATTTATCTATATAAAATTTGCTCCAACACCACCACCACCACCATCTCCAACAACAACAGTGCCTTCCAATTTGATCTGAGAACCCTCCTCACTTCATTGTCTTCTAAGGCCACAGGAGACACCCAATTCTCCACCAGCACAGTCATTGGTAGCACAAACCCATCTGACTCCGTCTATGGGCTTTTCATGTGCAAGGGCGACGATGACTCTCAACTCTGTCAACAATGCATCGGGGACGCAACTCTGCAACTCTTCTCAGAGTGCTCCTTGTCCAAACAAGCTGTGATTTGGTATGACGAGTGCATGGTTCGCTACTCCAATCGCAATTTCTTCTCCGCCGTCGATACGCAGCCTAAATTTGTCTATTTGAACCCCCTTAATGTCTCAAACCCAGAAAGCTTCTTGCATTTGGTGTATAAGGCCATGAATGCAACTGCAGACGAAGCAGCAAGTGGTGATGAGAAGATTAAGTACGCCACAAAGGAAGTAACTGTCTCAGACTCAGAATCTCACACCATTTACATTCAAGCTCAGTGCACACCAGATTTGTCACCCCGTGATTGCAGAACATGTCTCAGTGATGCGATAGGGGAATTTCCAAAGTGTTGTGTTGCAAAGAAGGGAGGGAGAGTTATGTATCCAAGCTGTAATATTAGGTATGAACCGGACCCTTTCTATCACACCATTTCTACATCACCCACTCCAGCACCACCACTAGTTTCTGCCACCACAAATAACACTTACTCGCCTCAGACTCAGACTACTTCTCCATCACGATCTACTGAGAAACAAAGTAACAGAGGACGAACAATTATCTTAATTGTTGTGCCTGCGGTTATTCTAGTGATGCTCTTTTCCTTTGGTTGCTATTTCCTAAAGCGAAAAGCAAGAAAGAGTCATTTGACAATTCTCAGAGAAAATTTTGGTAAAGAAAGTGCAACTTTAGAGCCATTGCAATTCGATTTTCCCATAATTGAAGCAGCAACAAACAACTTTTCTCAAGAAAATTACATTGGAAAAGGAGGATTCGGAAAGGTTTATAAGGGCATTCTACTTGATGGTCAACAAATAGCTGTAAAGAGACTTTCAGAAACTTCTAAGCAGGGTGTTGACGAGTTTAAGAATGAAGTTTTATTGATAGCGAAGCTTCAACATAGAAATCTGGTGGCATTCATTGGCTTTTGTCTTGAGGACCAAGAGAAAATACTCGTTTACGAATACGTGCCAAATAAGAGCCTTGATTACTTTTTATTCGATTCTCAAGGGCCAAATCCATTAAGCTGGGATGAACGTTATAATATTATTGGGGGGATTGCTCAAGGAATTATTTATTTACATGAGCATTCCCGACTTAAAGTCATACATCGTGATCTCAAACCTAGTAATGTTTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTGGCTAGAATTGTTGAAATAAATCAAGACCAAGGAAGTACAAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATACGCAATGCTTGGGAAATTTTCGGAGAAATCAGATGTTTTCAGTTTTGGAGTCATGATTTTAGAGATTGTTACCGGGAAAAAGAATCTAACTTCTTGGGAACCACAACCTGTTTCTAATGGTCTCTTGAGTTGTGTTTGGAGACAATTGAAGGATCAAACACCTTTAAGTGTCTTAGACATAAATATCAAAGAAAATTATTCTGAAATTGAGGTCATCAAGTGCATTCAGATTGGCCTATTATGTGTTCAACATAACCCTAATGATAGACCTACAATGTCAGAAATTGTTTCATATCTAAGTGGTTATTCAATTGATTTGCCAACTCCACAAGAACCTACATTTTTCTTGCACACTAGGATGAACCCAAATCCACAAGAATCAAGTTCTACTCAGTCTGGGAACAATTCTATCAATCAAGTGTCTACAAGTACTTTTCTTCCTCGATAG 2115 0.3957 MKSFYSIYPATHGCEQKIQYNTYMPSYNILFFFILISFLRFPPTKTEDSIAIYLYKICSNTTTTTISNNNSAFQFDLRTLLTSLSSKATGDTQFSTSTVIGSTNPSDSVYGLFMCKGDDDSQLCQQCIGDATLQLFSECSLSKQAVIWYDECMVRYSNRNFFSAVDTQPKFVYLNPLNVSNPESFLHLVYKAMNATADEAASGDEKIKYATKEVTVSDSESHTIYIQAQCTPDLSPRDCRTCLSDAIGEFPKCCVAKKGGRVMYPSCNIRYEPDPFYHTISTSPTPAPPLVSATTNNTYSPQTQTTSPSRSTEKQSNRGRTIILIVVPAVILVMLFSFGCYFLKRKARKSHLTILRENFGKESATLEPLQFDFPIIEAATNNFSQENYIGKGGFGKVYKGILLDGQQIAVKRLSETSKQGVDEFKNEVLLIAKLQHRNLVAFIGFCLEDQEKILVYEYVPNKSLDYFLFDSQGPNPLSWDERYNIIGGIAQGIIYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQGSTNRIVGTYGYMSPEYAMLGKFSEKSDVFSFGVMILEIVTGKKNLTSWEPQPVSNGLLSCVWRQLKDQTPLSVLDINIKENYSEIEVIKCIQIGLLCVQHNPNDRPTMSEIVSYLSGYSIDLPTPQEPTFFLHTRMNPNPQESSSTQSGNNSINQVSTSTFLPR* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2442 704 SUPERFAMILY Protein kinase-like (PK-like) 366 682 IPR011009 -
Lja2g2442 704 Pfam Protein tyrosine and serine/threonine kinase 386 655 IPR001245 GO:0004672|GO:0006468
Lja2g2442 704 SMART serkin_6 383 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2442 704 Gene3D - 50 161 IPR038408 -
Lja2g2442 704 Gene3D - 168 276 IPR038408 -
Lja2g2442 704 MobiDBLite consensus disorder prediction 674 704 - -
Lja2g2442 704 Pfam Salt stress response/antifungal 183 272 IPR002902 -
Lja2g2442 704 Pfam Salt stress response/antifungal 58 158 IPR002902 -
Lja2g2442 704 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 309 697 - -
Lja2g2442 704 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 43 289 - -
Lja2g2442 704 MobiDBLite consensus disorder prediction 287 315 - -
Lja2g2442 704 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 43 289 - -
Lja2g2442 704 Gene3D Transferase(Phosphotransferase) domain 1 459 662 - -
Lja2g2442 704 Gene3D Phosphorylase Kinase; domain 1 345 458 - -
Lja2g2442 704 CDD STKc_IRAK 389 655 - -
Lja2g2442 704 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 309 697 - -
Lja2g2442 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Lja2g2442 704 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Lja2g2442 704 ProSiteProfiles Protein kinase domain profile. 383 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2442 704 ProSiteProfiles Gnk2-homologous domain profile. 54 161 IPR002902 -
Lja2g2442 704 ProSiteProfiles Gnk2-homologous domain profile. 167 276 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2442 Lja-Chr2 30497554 30500881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2442 35 703 Receptor kinase-like Gene Family AT4G05200 43.338 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g2442 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2442 - - lja:Lj0g3v0304959.1 776.548