Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2436 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTAATCAAGTTTTCTAGCAGCCCCCACCAACAGCAACACAAAATCCCCGAAGATCTGATTCTTGATGAAATGATCACTAGCAGCCAGCCAAGGGAACAATTTTTTAGGGCTGAGATGTCTAAAGATCATCATAAGAGCAAGAAGATTATGGTCCACAGGGAGATTGAGAGGAAAAGGAGGCAAGATATGGCTTCCTTTTATGCATCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCACTATCTGAACACATAAATGAGGCAGCGAATTACATAAAACACATGCAAAATAATCTCAAGGAACTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCCACAATTTCATGCTTGAAAACCATGAGAGCAATAACACTACTAACAACTTCACTGTCCATGAGAATAATGGTATTCTGGGAATAGAAATTACCAGTGATTTCAAGGAGGAAAGTCTCAAACTTTCAAAATTGCTACATTTACTTCATGAAGAAGGACATGATGTTGTTAATTGGTTTTCAACCGAATTGGATGGCAGATTGGTTTACAGTGTCCAGTGTAAGGTTAACAATTCAAACAGTTTAGATCTATCTGAGCTGAAAAGGAAAGTTGCCAATGCAATTCCAACATTTATATGTTCTGATTAA 687 0.3872 MFPLQRGNELVIKFSSSPHQQQHKIPEDLILDEMITSSQPREQFFRAEMSKDHHKSKKIMVHREIERKRRQDMASFYASLRSLLPLEFIKGKRSLSEHINEAANYIKHMQNNLKELGAKRDELKKLSHNFMLENHESNNTTNNFTVHENNGILGIEITSDFKEESLKLSKLLHLLHEEGHDVVNWFSTELDGRLVYSVQCKVNNSNSLDLSELKRKVANAIPTFICSD* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2436 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 109 IPR011598 GO:0046983
Lja2g2436 228 Pfam Helix-loop-helix DNA-binding domain 61 110 IPR011598 GO:0046983
Lja2g2436 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 126 IPR036638 GO:0046983
Lja2g2436 228 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 225 IPR015660 GO:0003700|GO:0006357
Lja2g2436 228 Coils Coil 99 126 - -
Lja2g2436 228 CDD bHLH_AtORG2_like 58 127 - -
Lja2g2436 228 Gene3D - 47 141 IPR036638 GO:0046983
Lja2g2436 228 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 225 - -
Lja2g2436 228 SMART finulus 63 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2436 Lja-Chr2 30427405 30429349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2436 60 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 43.787 7.94e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g2436 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2436 - - gmx:100780888 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2436 2 30427405 30429349 Lja2g2436 2 30427405 30429349 ECH