Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2433 ATGGATGATGAAAACAAGAAGTGGATTCACAGGGAGACAGAGAAACAAAGAAGGCAAGAAATGGGTAAACTCTGCACCACCCTTAGATCGCTTCTCCCTTTAGAATATATTAAGGGAAAGCGCTCAACTTCTGATCACGTGAATGAGGCTATAAATTACATCAATCACTTGCAAAACAAGGTGAAGCAGTTACAGTATAAGAGGGATAAGTTAATGAAGGAGGTACCTAATTTGCACACTACTACTGGCCCTGAAAATGAATGCTCACCCACCCATCTTCAGCCATTTGTTATCGTTCATCCTTTCCCTGGAGGAGTTGAGATTGTGTGCAGTTACAGCTTAAAGTGTGTGTTCCCTTTGTCAAGAGTGCTAGACATTTTGCTTAAGGAAGGGCTTGATGTGGTAAGCAGCACTTCCACCAAAATAGATGAGAGATTCATACACACTATTATATCAGAGGATCCAAGTCATCTAAATATACTTGATACTGATTACTCTGATCAACTTCAAAGAAAGCTGACCGAGGCAATATCATCTACAGGAGTGGGAGAGACTTTGCCTGAACCTCAAATTTGCTAA 579 0.4076 MDDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSDQLQRKLTEAISSTGVGETLPEPQIC* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2433 192 Pfam Helix-loop-helix DNA-binding domain 9 58 IPR011598 GO:0046983
Lja2g2433 192 CDD bHLH_AtORG2_like 6 75 - -
Lja2g2433 192 Gene3D - 1 83 IPR036638 GO:0046983
Lja2g2433 192 SMART finulus 11 63 IPR011598 GO:0046983
Lja2g2433 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 183 IPR015660 GO:0003700|GO:0006357
Lja2g2433 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 80 IPR036638 GO:0046983
Lja2g2433 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 57 IPR011598 GO:0046983
Lja2g2433 192 PANTHER TRANSCRIPTION FACTOR 3 183 - -
Lja2g2433 192 Coils Coil 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2433 Lja-Chr2 30369874 30371424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2433 6 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 43.312 6.07e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g2433 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2433 - - gmx:100795953 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2433 2 30369874 30371424 Lja2g2433 2 30369874 30371424 ECH