Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2432 ATGTACTTGAAACGTTATTGTTGTTTCCCCTCAGACAATGAGCAAAGCAAACTTAAGTTTGACAGCAATAGGGACTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTCATCACGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAATTGAAGGCATTGAGATTGCGGTGAAGCGGTTGAAGATGATGACGGCGAAGGCGGAGATGGAGTTTGCAGTAGAAGTGGAAGTACTTGGAAGAGTGAGGCATAAAAATTTGTTGGGATTGAGGGGTTACTATGCAGGGGAAAATGAAAGGTTAATTGTGTATGATTACATGCCAAATCATAGTTTGCTCACTCATTTGCATGGTCCACTCTCTAAGGAATGTCATCTAGATTGGAGTAGAAGGATGAGTATTGCAATTGGAGCTGCTGAAGCTGTGGCGTATTTGCACCATGAGTCAACTCCTCACATCATACACAGAGATATAAAGGCAAGCAATGTTCTTCTAGACACTGAATTTCAAGCAATGGTTGCTGATTTTGGCTTTGCAAAGCTAGTACCAGATGGTGTGACCCATCTCACCACAAAGGTTAAAGGCACATTAGGATATTTGGCACCAGAATACGCCATGTGGGGAAAAGTTTCTGAGAGCTGTGATGTTTACAGCTTTGGGATTTTGCTGTTGGAGATTGTCAGTGCCAAGAGACCAATTGAGAAATTCCCGGGGGGTGTGAAAAGGGATGTTGTTCAATGGGCCACACCATTATTGAAGAAGGGTTTGTTTTATAATATTGCAGATCCAAAGTTGAAGGGTGAATTTGATATGGAGCAATTGAAAATAGTGACTGCAATAGCTATGAAATGCACTGATAGCAGTGCGGAGAAGAGGCCTACCATGACAGAAGTAGTGGATATGCTGAAGGATGGTATAGGGAAGAGAAGTGATTATTCCAATTTTAAGAAGAATATTATTGACCAAAAAAGTAAGAAGAATATTGAAGATGAAGAAAATGAAAAAAACTATTTGTATTAG 1056 0.4025 MYLKRYCCFPSDNEQSKLKFDSNRDYPWEMYTLKELLRATNNFHHDNKIGEGGFGSVYFGRTIEGIEIAVKRLKMMTAKAEMEFAVEVEVLGRVRHKNLLGLRGYYAGENERLIVYDYMPNHSLLTHLHGPLSKECHLDWSRRMSIAIGAAEAVAYLHHESTPHIIHRDIKASNVLLDTEFQAMVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKRPIEKFPGGVKRDVVQWATPLLKKGLFYNIADPKLKGEFDMEQLKIVTAIAMKCTDSSAEKRPTMTEVVDMLKDGIGKRSDYSNFKKNIIDQKSKKNIEDEENEKNYLY* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2432 351 Gene3D Transferase(Phosphotransferase) domain 1 119 332 - -
Lja2g2432 351 PANTHER OS01G0253100 PROTEIN 5 334 IPR045271 GO:0004714|GO:0006468
Lja2g2432 351 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Lja2g2432 351 ProSiteProfiles Protein kinase domain profile. 43 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2432 351 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 334 - -
Lja2g2432 351 SUPERFAMILY Protein kinase-like (PK-like) 24 315 IPR011009 -
Lja2g2432 351 Pfam Protein kinase domain 43 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2432 351 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2432 351 Gene3D Phosphorylase Kinase; domain 1 9 118 - -
Lja2g2432 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2432 Lja-Chr2 30342371 30344434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2432 31 329 Trihelix Transcription Factor Family AT1G70460 43.894 9.66e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lja2g2432 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2432 - - gmx:100800710 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2432 2 30342371 30344434 Lja2g2432 2 30342371 30344434 ECH