Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2421 ATGGGAAGAGGGAGAGTGGTTCTGGAGAGAATTGAGAACAAGATCAACCGCCAAGTAACATTCTCAAAGCGAAGGAGTGGATTGCTGAAGAAAGCTTTCGAGCTTTGTGTGTTATGCGATGCAGAAGTTGCCCTTATCATCTTCTCTAGCCGTGGCAAGGTTTTCCAGTATAGCAGCACTGACTTGAACAAAATCATCGAGAGATATCGACAATGTCGTTACAACAAGTCAATGGTTGCTGGCGATTCAATAGAACACGAATCTCAGGGCATATACCAGGAGTTCTTAAAATTAAGAGCGAAATATGAATCACTTGAGCGGAAGCAAAGGCATTTTCAAGGAGAAGATCTTGAGCCACTTAGCTTGAAAGAATTACAAAGCCTTGAGGAACGACTAGACACAACGCTCTCACTAGCTCGACAGCAACAAATGAAAAAGCTCATGGCTAGAGCCGATGAATTACGTGAAAAGGTGTACAATTTAGAGGAGATAAACAAACAATTGAAGCATGAGATTTTAGAACCAGGAAGTTGCTTCAAAGAGGAAAGCAATCAACAGAAGAACAAAGGATAG 573 0.4171 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKVFQYSSTDLNKIIERYRQCRYNKSMVAGDSIEHESQGIYQEFLKLRAKYESLERKQRHFQGEDLEPLSLKELQSLEERLDTTLSLARQQQMKKLMARADELREKVYNLEEINKQLKHEILEPGSCFKEESNQQKNKG* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2421 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lja2g2421 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 PANTHER MADS BOX PROTEIN 1 175 - -
Lja2g2421 190 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Lja2g2421 190 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g2421 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 Coils Coil 122 171 - -
Lja2g2421 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g2421 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 175 - -
Lja2g2421 190 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g2421 190 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2421 Lja-Chr2 29981295 30009423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2421 1 180 MADS-box Gene Family AT2G45650 53.889 9.97e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g2421 K-box 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2421 K09264 - gmx:100793681 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2421 2 29981295 30009423 Lja2g2421 2 29981295 30009423 ECH