Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2414 ATGGTTGAAATTAATGAAGAGGCTCATGTGGACTTGTCTAATTCTGGAGGCATGAATGAGTCTGAGGCTCTGAATGATATCTCAGATAATTCTGATGGAGATGATGTGGTCAATAATGATTCTTCCCAACAACAGTGCAAGCTAATTCCTGAGTTGACTATTGATGAAATTAGGAAGCTGGAGTTTTTGTCTGAGCAGGATGCCGTTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCGGCGCGATCGAAAAGGTAATGTTGTTAGTCGCCAGCTTGTTTGTAATAGGGAAGGTGAGAGACATGAGAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAAGCTAAATTTCGTGTTGTTTATTTTGAACCTGAGCACAATCATGAGTTGACACTGGCTAAGCAAGTTCATTTAATTCCGGCATTCAGGGGATTGACTAATGGTGATAAGGCTCAAGTTGACACACTAAAGCTCTATGGCGTGAGGACTGTGGAAGAGTATAGGCACAATGAGTTAGCCTCTGACTTTAGGTCATGTTATGGGGAGCCTGTGTTAACCACTGCTTTGAGTGGCATTGAACAAGGAGCTGCTAAACTGTTGACCAGAAATATGTTTAGGGAAGTTAGACATGTCATGGAACAAGCTTTGAGCCTTAACCTTGTTGAACGGTCAGAGGTGTGCAACACAGTAATGATAAAGCTGATTGTTTATGATAATAATCAGACCACATTTGAGTGTGATTGTGGGCTATCTGATTTTAAGGGCATTCCTTGTTCTCACATCATATGTGCTATGAGGATTGAGGACTTCACCACATTTCCTGCATCTCTTGTGGATTACATACACACAATACCCTCCATTGAGCTTGATTCTGAAAAAGTGAAATTGTTGCGTAGAGGTGCCATTTCTGCTGCATGCAATTTTCTTAGTGAATATGCCGCTGATGATGCTACAGATTTTTCAGCCGTAATTGAGGATATATACAAACTGGTCTCGAAAGTTCAGAAACTTGTCGTGAGAACCCGAGGTGCACGAAAGAAGTTGAAGACTAAGAAGAAGAAAAGACTCTGTTCTAATTGCAGAAAGAGTGGCCACACAATCCGGACATGTCCTACATTGTTTGAGGGAATCGGAGATGATGAAGTAGATGAAGGAGATTCATCTGTTGAGCTGGATGATGATAGCATTACTGAAAATGTAAGGCAATATCATGAATGTGACCCTAATGGGTCACGTTGA 1293 0.4138 MVEINEEAHVDLSNSGGMNESEALNDISDNSDGDDVVNNDSSQQQCKLIPELTIDEIRKLEFLSEQDAVEFYQHYAQFKGFGVRKDDVRRDRKGNVVSRQLVCNREGERHEKHLKKVSRVKEAKPITRVSCQAKFRVVYFEPEHNHELTLAKQVHLIPAFRGLTNGDKAQVDTLKLYGVRTVEEYRHNELASDFRSCYGEPVLTTALSGIEQGAAKLLTRNMFREVRHVMEQALSLNLVERSEVCNTVMIKLIVYDNNQTTFECDCGLSDFKGIPCSHIICAMRIEDFTTFPASLVDYIHTIPSIELDSEKVKLLRRGAISAACNFLSEYAADDATDFSAVIEDIYKLVSKVQKLVVRTRGARKKLKTKKKKRLCSNCRKSGHTIRTCPTLFEGIGDDEVDEGDSSVELDDDSITENVRQYHECDPNGSR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2414 430 MobiDBLite consensus disorder prediction 12 43 - -
Lja2g2414 430 ProSiteProfiles Zinc finger SWIM-type profile. 249 287 IPR007527 GO:0008270
Lja2g2414 430 Pfam FAR1 DNA-binding domain 70 148 IPR004330 -
Lja2g2414 430 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Lja2g2414 430 SUPERFAMILY Retrovirus zinc finger-like domains 367 395 IPR036875 GO:0003676|GO:0008270
Lja2g2414 430 SMART 26again6 262 289 IPR006564 GO:0008270
Lja2g2414 430 MobiDBLite consensus disorder prediction 1 43 - -
Lja2g2414 430 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 11 198 - -
Lja2g2414 430 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2414 Lja-Chr2 29695603 29699078 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g2414 FAR1 5.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2414 - - ccaj:109806300 170.629