Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2410 ATGGACGTTGACGGTGGTAGTAAGCGCGTGTACCACAGGCTCGGTGGGCCCGGTGGAGACGCGAGGAACCAGAAAGTGTGTTTTTATTGGCAAGCGGGCAAGTGTGATCGTCACCCGTGCCCGTATCTGCATAGCGAGGTGGTGCCTCCTCATTCCAATTCCAATGGTACTTCCTCCAAGAGGCCTCATGGGTATGCTGATAATTCGAGCTTCTCGGGGCCGCGGCGGAGCCAGAATTTTAGTACCTGGGGTCCTGGTGGTGGCCGCGGCGGCGGACGTGGTGGTGCTGGACGTGGAGGGGGAGTTGGTGGTGGGAGGGGAGTGGTTGTCAAGGCTGATAAAGTTTGTAATTATTGGGCTCAAGGGAGCTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTTTAGGTGATGGGTTTTCTTTGTTGACACAGCTTGATGGGCATACCAAGGTTGTGAGTGGCATTGCCATGCCGTCTGGTTCTGATAAGCTTTATACTGGAAGTACGGATGAGACCGTAAGGATTTGGGACTGTCAGTCTGGAAAGTGTATAGCTGTGATCACTCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACTCACAAAATTCAATGGAGCTAAGTTTAGATGGCCCGGTTGGGCAAGTTTATGCACTTGTTGTGACTAATGATTTGCTCTTTGCTGGTACGCAGGACGGATCTATATTGGTTTGGAAGTTTAATGTGGTTACCAACTGCTTTGAGCCTGCTGCATCACTTAAAGGACATTCCCGTGGAGTTGTTTCATTATTTGTTGGAGCTAATAGACTTTACTCTGGTTCTATGGACAATACAATAAGAGTCTGGAACCTTGAAACCTTGCAGTGTCTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTTTTATCTTGTTCATTGGATAAAACAGTAAAGATATGGGTTGCTACGGAAAGTGGTAACTTGGAGGAGACATATAGCCACAATGAAGAACATGGCATAGTTACCCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATATTGCTTTGCTCTTGCAATGATAACACTGTGCGGCTCTATGATCTTCCATCATTTGCAGAGAGAGGTAAGATATTCACAAAACAAGAGGTACGAGCAATTCAGACAGGTCCTAGTGGCATATTCTTCACTGGCGATGGAACTGGTCAAGTTAAAGTGTGGAATTGGATAACGGATCCAACTGCAGCACTCCAATAA 1317 0.4723 MDVDGGSKRVYHRLGGPGGDARNQKVCFYWQAGKCDRHPCPYLHSEVVPPHSNSNGTSSKRPHGYADNSSFSGPRRSQNFSTWGPGGGRGGGRGGAGRGGGVGGGRGVVVKADKVCNYWAQGSCSYGERCKFLHSWSLGDGFSLLTQLDGHTKVVSGIAMPSGSDKLYTGSTDETVRIWDCQSGKCIAVITLGGEVGCMISEGPWVFVGIPNFVKAWNSQNSMELSLDGPVGQVYALVVTNDLLFAGTQDGSILVWKFNVVTNCFEPAASLKGHSRGVVSLFVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKIWVATESGNLEETYSHNEEHGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIQTGPSGIFFTGDGTGQVKVWNWITDPTAALQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2410 438 PANTHER - 1 436 IPR044715 -
Lja2g2410 438 SUPERFAMILY CCCH zinc finger 112 135 IPR036855 GO:0046872
Lja2g2410 438 Pfam WD domain, G-beta repeat 267 301 IPR001680 GO:0005515
Lja2g2410 438 Pfam WD domain, G-beta repeat 306 340 IPR001680 GO:0005515
Lja2g2410 438 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Lja2g2410 438 SUPERFAMILY WD40 repeat-like 136 431 IPR036322 GO:0005515
Lja2g2410 438 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Lja2g2410 438 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Lja2g2410 438 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Lja2g2410 438 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Lja2g2410 438 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 436 - -
Lja2g2410 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Lja2g2410 438 Gene3D - 123 286 IPR015943 GO:0005515
Lja2g2410 438 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lja2g2410 438 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Lja2g2410 438 SMART c3hfinal6 112 136 IPR000571 GO:0046872
Lja2g2410 438 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Lja2g2410 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 135 IPR000571 GO:0046872
Lja2g2410 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Lja2g2410 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Lja2g2410 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Lja2g2410 438 MobiDBLite consensus disorder prediction 50 84 - -
Lja2g2410 438 Gene3D - 287 437 IPR015943 GO:0005515
Lja2g2410 438 MobiDBLite consensus disorder prediction 50 101 - -
Lja2g2410 438 SMART WD40_4 220 257 IPR001680 GO:0005515
Lja2g2410 438 SMART WD40_4 345 388 IPR001680 GO:0005515
Lja2g2410 438 SMART WD40_4 264 301 IPR001680 GO:0005515
Lja2g2410 438 SMART WD40_4 141 180 IPR001680 GO:0005515
Lja2g2410 438 SMART WD40_4 304 341 IPR001680 GO:0005515
Lja2g2410 438 SMART WD40_4 391 428 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2410 Lja-Chr2 29590664 29597481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2410 243 431 Miscellaneous Gene Families AT5G08390 27.861 1.07e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja2g2410 WD40 0.00048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2410 - - mtr:MTR_6g465150 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2410 2 29590664 29597481 Lja2g2410 2 29590664 29597481 ECH