Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2404 ATGTCAACCCGTAGATATGCTTTTGGAAGGGCTGATGAGGCTACCCACCCAGACTCCATAAGAGCCAGCATAGCTGAATTTGTCTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACAGGGATTCAGCTTTCTCAGCTGGTGAATTGTTGGCAATTGCACTTGCACATGCATTTGCTCTGTTTGCTGCTGTGTCTTCCAGCATGCATGTATCCGGTGGCCATGTCAATCCGGCAGTGACATTCGGTGCTCTCATAGGTGGAAGAATCTCTGTTGTTCGTGCCATCTACTATTGGATTGCTCAACTTCTAGGTGCTATAGTGGCTGCCCTCTTGCTCAGGCTTTGCACTAATAACATGAGACCAGCAGGGTTTCATGTAGGACAGGGTATTGGCGCTTTCCACGGGCTTATACTTGAGATTATCATGACATTTGGGCTGATGTACACAGTATATGCTACTGCAATTGATCCCAAAAGGGGTAGTATTGGGGCCATTGCACCTTTGGCAATTGGACTCATAGTTGGGGCAAACATCCTTGTTGGTGGACCATTTGATGGAGCATGCATGAACCCAGCTCTGGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGGTCTTCTGGTTGGGCCCTTTTCTTGGAGCTGCACTGGCAGCACTCATATATGAGTATCTTGTGATCCCAACAGAGCCCTCACATGCACACCAGCCTTTGGCTCCTGAAGATTATTAG 768 0.4844 MSTRRYAFGRADEATHPDSIRASIAEFVSTFIFVFAGEGSGLALVKIYRDSAFSAGELLAIALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVVRAIYYWIAQLLGAIVAALLLRLCTNNMRPAGFHVGQGIGAFHGLILEIIMTFGLMYTVYATAIDPKRGSIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWVFWLGPFLGAALAALIYEYLVIPTEPSHAHQPLAPEDY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2404 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Lja2g2404 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Lja2g2404 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lja2g2404 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
Lja2g2404 255 Gene3D Glycerol uptake facilitator protein. 4 247 IPR023271 -
Lja2g2404 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja2g2404 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2404 Lja-Chr2 29455788 29457646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2404 2 255 Major Intrinsic Protein MIP AT1G73190 72.348 4.72e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2404 K09873 - gmx:100817450 427.172