Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2399 ATGACAATACCAACCCAATCATGTGTAAAATTTTCATTTCACTTCCTTCTAACTCTGTTCTTCTTTCTATGCCATGCAAATTCTCAGTCTCAGACTCAGTTATATGATCAAGAACATGAAATCCTAATGAACATAAAGCAATACTTTCAAAACCCACCTATCCTCACACACTGGACTCAATCAAGCTCCTCCTCTCACTGTTCTTGGTCAGAAATCACCTGCAACAATGGCTCTGTCACTGGACTCACCATCACCAAGGCCAACATCACTCAAACAATACCACCCTTCATCTGTGACCTCAAAAATATCACACATGTTAACTTCAGCTCCAATTTCATCCCTGGTGATTTCCCAACATCTCTCTACAACTGTTCCAAGCTAGAGTACCTTGACCTCTCTCTCAACAATTTTGATGGCAAAATCCCTCATGACATAGACAGTTTGAGTGGTAATTTGCAATATCTTAACCTTGGCTCCACCAATTTCAAAGGTGATATTCCTTCCAGTATTGGAAAGTTAAAGGAACTGAGGGAACTCCACCTTCAATATTCTTTATTCAATGGCACTGTCCCTGCTGCGATAGGTGATTTGTCCAATCTTGAGGTCTTGGACTTGTCCTCAAACACCATGTTCCCTTCTTGGAAATTGCCTAATAGCTTCACCAAGTTGAAAAAATTGAAGGTTTTGTATGTTTATGGTTCCAATTTGATTGGGGAAATCCCAGAAACCATTGGAGACATGGTGGCTTTGGAGAAGTTGGATATGTCAGACAATGGTTTAACTGGAAAAATTCCTAGCAATTTGCTCATGCTGAAGAATCTGAGCATATTGCAACTTTATAACAACAGACTTTCTGGGGAGATACCTGGTGTGATTGAAGCACTGAACTTGACAGCACTTGGGCTCTCAATCAACACTCTCACAGGGAAAATACCAGAAGATGTTGGAAAGCTTCAGAAGTTAACATGGTTGAGTTTGTCTCAGAATAGCTTATCAGGGGTGGTACCAGAAAGCTTAGGAAGGCTTCCAGCTCTTGCCGATTTTCGCGTATTTCTCAACAATTTATCAGGTACTCTTCCTCCTGATTTAGGCCGTTACTCAAAGCTCAAGACCTTTTTTGTTTCATCCAATAAATTTACTGGAAAGTTACCAGAGAATTTGTGCTATTATGGTGAGTTACTCAACTTGACAGCTTATGACAATAATATGTTTGGGGAATTGCCTGAGTCACTAGGAAATTGCAGTGGCCTGCTGGATCTGAAAATTTACAGTAATCAGTTTTCTGGTAATATTCCTAGTGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTGAGCCATAATAATTTCACTGGTGTGCTTCCTGAGAGGTTGTCTTGGAATGTGTCAAGGTTTGAGATAGGTTACAATCAGTTTTCTGGTGGAATTCCAAATGGAGTGTCATCATGGAGTAATGTGGTTGTGTTTGATGCAAGAAAGAACCACTTTAATGGAAGTGTTCCTCAAGGGATAACTTCTCTTCCAAAGCTAACAACTCTGTTGCTTGATCAGAACCAGCTTTCTGGGCCACTTCCTTCAGATATAATATCATGGAAGTCACTAGTAACTCTAAATTTCAGCCACAACCAAATCTCTGGACAAATCCCAGATGCAATTGGTCAATTACCTGTCCTGAGTCAACTTGATCTCTCAGAAAATCAATTATCTGGCAAAATCCCTTCTCAATTCACCAGACTCACCAATCTCAACTTGTCTTCTAATCAATTGACTGGGAGGATTCCAAGTGAGTTTCAAAATTCTGTGTATGCAACCAGCTTTTTAGGCAATTCTGGTCTCTGTGCTGATACCCCAGCATTGAACCTTTCTTTGTGCAACTCTGGCCCTCAAAGCACAAGCAAGGGCTCATCATCATGGTCTATTGGCTTGGTTATAGGCCTGGTGGTAGTAGTAGTGTTCTTACTGGCTTTGCTTGCATCACTATTGATTCTCAGAGTTCACAGAAAAAGAAAGCAAAGATTGGATAACTCTTGGAAGCTCATTTCCTTTCAGAGGCTGAGCTTCACTGAATCAAGCATTGTCTCATCCATGACAGACCAAAACATTATTGGCAGTGGCGGATACGGTACAGTGTACCGCGTTGATGTTGATAGTTTAGGCTATGTTGCTGTGAAAAAGATTTGTAATACCAGAAGCTTAGACATAGACCAGAAGCTCGAAAGCTCATTTCGTTCCGAAGTTAAAGTACTGAGCAATATTCGCCATAACAACATTGTGAGGTTGTTGTGCTGTATCTCTAATGAGGCTTCTATGCTTCTTGTCTATGAGTATCTGGAAAATCATAGCTTAGATAAGTGGCTGCACTTGAAACCTAAGTCATCATCTGTGTCAGGTGTAGTCCAGCAGTATACGGTACTTGATTGGCCTAAGAGGTTGAAAATAGCCATTGGGGCTGCTCAAGGTTTGAGCTACATGCACCATGATTGTTCACCCCCCATTGTTCATCGAGATGTGAAAACAAGCAACATCCTTTTGGATAAGCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCTAGGATGTTGATCAAGCCAGGGGAACTTAACATCATGTCAACTGTGATTGGCACATTTGGCTATATTGCTCCAGAATATGTTCAAACAACAAGAATCAGTGAGAAGGTTGATGTGTATAGCTTTGGGGTAGTCCTATTGGAGCTGACAACTGGTAAAGAAGCAAATTATGGAGACCAACACTCATCTCTTGCAGAGTGGGCGTGGCGTCACATTCTGATAGGAAGTAATGTAGAAGATCTGCTAGACAAAGATGTCATGGAAGCTAGTTACATTGATGAGATGTGCAGTGTGTTCAAGCTTGGGGTCATGTGCACTGCAACACTTCCTGCTACCAGGCCTTCCATGAAGGAGGTCCTACAAATATTGCTCAGCTTTGGAGAACCATTTGCTTATGGAGAACAGAAAGTTAGCCACTACTATGATGCTGCTCCCCTTCTTAAGAATTCAAATAGGGAAACTAGGTTAGATGTTGATATATGA 3057 0.4099 MTIPTQSCVKFSFHFLLTLFFFLCHANSQSQTQLYDQEHEILMNIKQYFQNPPILTHWTQSSSSSHCSWSEITCNNGSVTGLTITKANITQTIPPFICDLKNITHVNFSSNFIPGDFPTSLYNCSKLEYLDLSLNNFDGKIPHDIDSLSGNLQYLNLGSTNFKGDIPSSIGKLKELRELHLQYSLFNGTVPAAIGDLSNLEVLDLSSNTMFPSWKLPNSFTKLKKLKVLYVYGSNLIGEIPETIGDMVALEKLDMSDNGLTGKIPSNLLMLKNLSILQLYNNRLSGEIPGVIEALNLTALGLSINTLTGKIPEDVGKLQKLTWLSLSQNSLSGVVPESLGRLPALADFRVFLNNLSGTLPPDLGRYSKLKTFFVSSNKFTGKLPENLCYYGELLNLTAYDNNMFGELPESLGNCSGLLDLKIYSNQFSGNIPSGLWTSFNLSNFMVSHNNFTGVLPERLSWNVSRFEIGYNQFSGGIPNGVSSWSNVVVFDARKNHFNGSVPQGITSLPKLTTLLLDQNQLSGPLPSDIISWKSLVTLNFSHNQISGQIPDAIGQLPVLSQLDLSENQLSGKIPSQFTRLTNLNLSSNQLTGRIPSEFQNSVYATSFLGNSGLCADTPALNLSLCNSGPQSTSKGSSSWSIGLVIGLVVVVVFLLALLASLLILRVHRKRKQRLDNSWKLISFQRLSFTESSIVSSMTDQNIIGSGGYGTVYRVDVDSLGYVAVKKICNTRSLDIDQKLESSFRSEVKVLSNIRHNNIVRLLCCISNEASMLLVYEYLENHSLDKWLHLKPKSSSVSGVVQQYTVLDWPKRLKIAIGAAQGLSYMHHDCSPPIVHRDVKTSNILLDKQFNAKVADFGLARMLIKPGELNIMSTVIGTFGYIAPEYVQTTRISEKVDVYSFGVVLLELTTGKEANYGDQHSSLAEWAWRHILIGSNVEDLLDKDVMEASYIDEMCSVFKLGVMCTATLPATRPSMKEVLQILLSFGEPFAYGEQKVSHYYDAAPLLKNSNRETRLDVDI* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2399 1018 SUPERFAMILY Protein kinase-like (PK-like) 691 981 IPR011009 -
Lja2g2399 1018 SMART serkin_6 697 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2399 1018 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 1012 - -
Lja2g2399 1018 Pfam Leucine Rich Repeat 579 600 IPR001611 GO:0005515
Lja2g2399 1018 Pfam Protein kinase domain 699 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2399 1018 Gene3D Phosphorylase Kinase; domain 1 668 777 - -
Lja2g2399 1018 Pfam Leucine rich repeat 151 208 IPR001611 GO:0005515
Lja2g2399 1018 Gene3D Ribonuclease Inhibitor 389 481 IPR032675 -
Lja2g2399 1018 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Lja2g2399 1018 Gene3D Ribonuclease Inhibitor 294 388 IPR032675 -
Lja2g2399 1018 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 1012 - -
Lja2g2399 1018 SMART LRR_typ_2 197 222 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 577 600 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 533 556 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 271 295 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 508 532 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 223 247 IPR003591 -
Lja2g2399 1018 SMART LRR_typ_2 318 341 IPR003591 -
Lja2g2399 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Lja2g2399 1018 Gene3D Ribonuclease Inhibitor 190 293 IPR032675 -
Lja2g2399 1018 Gene3D Ribonuclease Inhibitor 482 621 IPR032675 -
Lja2g2399 1018 Gene3D Ribonuclease Inhibitor 35 189 IPR032675 -
Lja2g2399 1018 ProSiteProfiles Protein kinase domain profile. 697 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2399 1018 SUPERFAMILY L domain-like 36 295 - -
Lja2g2399 1018 CDD STKc_IRAK 703 981 - -
Lja2g2399 1018 Gene3D Transferase(Phosphotransferase) domain 1 778 994 - -
Lja2g2399 1018 SUPERFAMILY RNI-like 296 600 - -
Lja2g2399 1018 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2399 Lja-Chr2 29399320 29403161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2399 32 1017 Receptor kinase-like Gene Family AT5G25930 49.648 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja2g2399 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2399 - - gmx:100813894 1484.54