Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2397 ATGTCATCATCAACATCAACCCCTCAAGTCATCACTTGCAAAGCTGCAGTAGCATGGGGAGCTGGAGAGCCATTGGTGATAGAGGAAGTGCAAGTGAGTCCTCCACAACCAATGGAGATCAGGGTCAAGGTTGTCTGCACCTCTCTCTGTCGCAGCGACATTTCCGCTTGGGAATCTCATCCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGGCTAGGAGTGACTGAATTCAAAGAGGGAGACCATGTGCTGACAGTATTCATTGGAGAATGCATGGAGTGCAAGCCTTGCACATCAGGAAAAAGCAACGTTTGTCAAGTTTTGGGATTGGAAAGAAATGGTCTAATGCATAGTGATCAGAAGACACGCTTCTCAATAAAAGGGAAGCCTGTTTACCATTATTGTGGTGTTTCAAGTTTCAGCGAATACACAGTAGTTCATTCTGGGTGTGCAGTGAAAGTCAGCCCAAATGCACCTCTTGAAAAGATATGCCTTCTGAGCTGTGGGGTTGCTGCAGGTCTGGGCGCAGCATGGAATGTTGCTGATGTCTCAAAAGGATCAACAGTTGTGATATTTGGTCTTGGAACTGTTGGTCTTTCTGTTGCACAAGGTGCCAAACTAAAGGGTGCCTCTCGAATAATTGGTGTCGACAACAATCCGCAGAAGTGTGAAAATGCTAAAGCTTTTGGGATTACAGAAGTTGTGGACCCGAATTCCTACGAAGAACCTATTGCACAAGTTATTAATCGTATTACAGATGGAGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACCGCGTTGCAATCTTGTTGTGATGGATGGGGATTGACGGTAACACTTGGTGTGCCGAAGGTGAAGCCTGTGATGTCAGCTCATTATGGACTACTCCTAATGGGAAGAACATTGAAAGGGTCTATGTTTGGAGGATGGAAACCTAAATCTGATCTACCTTCATTAGTTGACAAGTATGTGAACAAGGAAATCCAGATTGATGACTATATAACACACAATTTGCAATTTGATGAAATTAACAAAGCTTTCACTCTCATGAGGGAAGGAAAGTGTCTGCGTTGTGTTATGCACATGCCAAGATAA 1137 0.4406 MSSSTSTPQVITCKAAVAWGAGEPLVIEEVQVSPPQPMEIRVKVVCTSLCRSDISAWESHPIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMECKPCTSGKSNVCQVLGLERNGLMHSDQKTRFSIKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPNAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLKGASRIIGVDNNPQKCENAKAFGITEVVDPNSYEEPIAQVINRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPVMSAHYGLLLMGRTLKGSMFGGWKPKSDLPSLVDKYVNKEIQIDDYITHNLQFDEINKAFTLMREGKCLRCVMHMPR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2397 378 PANTHER ALCOHOL DEHYDROGENASE 7 376 - -
Lja2g2397 378 SUPERFAMILY GroES-like 7 186 IPR011032 -
Lja2g2397 378 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 7 376 - -
Lja2g2397 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 340 IPR036291 -
Lja2g2397 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Lja2g2397 378 Gene3D - 181 319 - -
Lja2g2397 378 Gene3D - 16 371 - -
Lja2g2397 378 CDD alcohol_DH_plants 11 375 - -
Lja2g2397 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lja2g2397 378 Pfam Zinc-binding dehydrogenase 205 330 IPR013149 -
Lja2g2397 378 Pfam Alcohol dehydrogenase GroES-like domain 38 161 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2397 Lja-Chr2 29372915 29379119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2397 39 365 Monolignol Biosynthesis Gene Families AT4G37990 23.164 9.22e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2397 K00001 - gmx:100819938 703.36