Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2390 ATGGAAGACTTAGAAATTCCAAATTGCTGTTCAGATGAAGGTTCTTCATCAAATGGGGAAGGAAAAAATGTTGCCGGAGATCTATCATCTACCACACCTACCTTGTCTGAATCAATTGGTGAGGAAGAAGCGGGTTATGCTTTCAATAGTATGGATGATGCTGCAAACATTGTGTGGGATAGTATTAATGAGACTAACTTCAAGAAGTACCATTTTTTGAATCGGCAAGTTGTATTTGAGTTCTACAACTTGTATGCTAGGATAAAGGGATTCTCAATACGGAAGAGCAAGGTGGTGAGAAACAAGCATGGGGAAATTGTGAGGCAAGACTTAGTGTGTCACAAGGAAGGCTTTCGTGAAGAGAAAAATCGAATGAGGGCCAATCGGAAGCGGGAAACAAAGGTAGAGACAAGGTGCGGGTGCTGTGCAAAATTGAGGGTTCGTTTGGATGTGGAAAGTGGTAGGTGGCATGTGGTATTATTTGGAGATGATCACAACCATGCAATGTTAGAGGGGAAGCAATCATCAATGTTACCAGCTCATCGGCAGATGAAAGATGGTGATATAGTGGGAATGAACAGCATGCGAAAAGCTGGTATTAGCACAACTGAGATATACAATTTATTTGCTGATCAATCCGGGGGTTTTGATAAAAACAATTTTCAAAAGGTAGATATGCTTAATCAAATGACGAAGCAGAAACAGAAGAAGCAGTGTGATGCCAAAGCTGTTCTAGTGTACCTTAAGGGTCTTGCTTCTGTTAGGAGCAAGGGATGTGGCGGTTCACAAACTGGGAACAAGACAGGCAAAAGAAAGTGCAGTATTTGTAAGAATGAAGGTCACAACAAGATAACATGCCCCCAGAACAAAAGGGCAAAAGTTGCAGCATGTGGTGAACCTTCTAATGTGGGTCATGATGATGATGGAGCAGGTGATTAG 939 0.4185 MEDLEIPNCCSDEGSSSNGEGKNVAGDLSSTTPTLSESIGEEEAGYAFNSMDDAANIVWDSINETNFKKYHFLNRQVVFEFYNLYARIKGFSIRKSKVVRNKHGEIVRQDLVCHKEGFREEKNRMRANRKRETKVETRCGCCAKLRVRLDVESGRWHVVLFGDDHNHAMLEGKQSSMLPAHRQMKDGDIVGMNSMRKAGISTTEIYNLFADQSGGFDKNNFQKVDMLNQMTKQKQKKQCDAKAVLVYLKGLASVRSKGCGGSQTGNKTGKRKCSICKNEGHNKITCPQNKRAKVAACGEPSNVGHDDDGAGD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2390 312 Pfam FAR1 DNA-binding domain 80 170 IPR004330 -
Lja2g2390 312 MobiDBLite consensus disorder prediction 10 36 - -
Lja2g2390 312 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 47 205 - -
Lja2g2390 312 MobiDBLite consensus disorder prediction 1 36 - -
Lja2g2390 312 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 47 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2390 Lja-Chr2 29294730 29297158 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g2390 FAR1 2.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2390 - - mtr:MTR_1g070355 196.823