Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2389 ATGGATGTTGGGTCTGATGATAAAGTTCACATGGTAGGAATTCATGGAATTGGAGGGATTGGTAAAACGACACTTGCTCTAGCAGTTTACAATTCCATTGCTGACCATTTTGAAGGTTTATGTTTTTTAGAAAATGTTCGAGAAAATTCAAACAAACATGGGTTACCACATCTCCAAAAGATTTTTCTTGTGGATGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCGGCAAAGGAATTTCAATGATACAACGTAGGCTCCAGCAAAAAAGGGTTCTTCTGATTCTAGATGATGTTAACAAGATGGAGCAGCTACAGGGCATTATTGGAAGGCCTGATTGGTTTGGTCGTGGTAGTAGAGTCATCATCACGACTCGGGATAAACACTTGCTAGCATTTCACGGGGTTCAAAGCACATATGAAGTGGAAACATTGAACAATAATGATGCTTTTAGATTGCTCAAATGGAAAGCTTTTAAAGATGACAAGGTTAGACCAAATTATGAAGACATGTTAAATCGTGCAGTGGCTTATGCTTCCGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTATGGAAAAAATATACATGAATGGAAATCTGCATTAGAACAATATGAAAAGGTTCCAATTAGAAAGATCCAACAGGTACTTGAAGTGAGTTTTGTTGCTTTAGAGAAACAAGAGCAAAGTGTTTTCTTAGACATCGCTTGTTGCTTCAAAGGATATAACTTAAAAGAGGTCGAAAATATACTCTCTGCCCATCATAACCAATGCATTAAATATCAAATTGTTGTGCTGGTTGATAAGTCTCTCATAAAGATTACTGATTCGGGTGATGTGACACTACACGACTTGATTGAGGATATGGGTAAAGAAATTGTGCGACAAGAATCACCACAAGAGCCTGGAAACCGCAGTAGGTTATGGTTTCATGAAGACATATTTGAAGTTTTGGAACAAAATACGGGAACAAGCAAAATTGAAATGATGCATCTAGATTACCTGTCATTTGAAGAAGTGAATTGGGATGGAGAGGCTTTCAAAGAGATGAAAAAACTGAAAACACTTGTCATTAGAAAAACTCATTTTTCTAAAGGTCCAGAGCATCTTCCAAATAGTTTAAGAGTACTAGAGTGGTGGAAATACCCTTCACAACATTTACCAAGTGATTTCCATCCAAAGAAACTTTCCATATGCATATTACCTTATAGTAGCATGGTGTCCTTGGAGTTGGGAAGATCATCAAAGAAGTTCGAGACTATGAAAGTTTTAAATCTCGATTTCTGTGAATCATTAACAGAGATACCTAACTTAACTGGTCTCCCAAATTTAGAAGAGCTTTCATTTGAATTTTGTTCAAAATTAATTACGATTGACTGTTCGGTTGGGTTGTTGGCCAAACTTAAAAGCTTGAATGCTGGTTATTGCTTCCAGCTTAGGAGTTTTCCTTCCCTTAAGCTGCCCTCTCTTGAAAAACTCTATCTTCATGGTTGTTTAAGTCTTGAGAGTTTTCCAGAAATATTAGAAAAGATGGAAAATATAAGGAAGCTTGATTTGAGGTGCACTAACATAAGCAAATTTCCACATTCATTTGGAAATCTGACTCGACTTCTATTCATGTGGGTTTCTGACTTGCGGCCATCAAGGAGCTTAGACACGATGCCAGAACTATGGCTCGAAATCAGTCAGCGGCGGATATATTATGAGGATAGCGAGAGTGAGAGTGAAGAAGAAGTGATGGATGGCGGAGCTGTGGAATTAGTTCCCACGTTCTTGAATGAAAAAGAGAGTTCCATGCTTTTGCCTTCAAAACTAGAATGTCTTACTCTCGAACAGTGCCACCTGTCAGATGAATATTTAGTATTAGTTCCCTCCTTGTTTCCTAACTTGCAAGAATTAGACCTAATGGATTGTTCATCAATCACAGTTGTACCTGAATGCATCAAAGAATGTCGCTTTTTACGGAGGCTTTTCTTGAATAGATGCGAGCAACTTAGAGAAATTTGTGAAGGGATTTTGCCAAGATTAAACAAGTTAGTTGTATGCGGATGTCCATCCTTGAGTTCCAGTTGTAGAAGCATGTTGGTGAGGCAGGAACTGGGTGCGGATGTAGACATTCATCTTCAATTGCGAAACTTAGAAGGAGAAACGATTCCAGAGAGGTTTGAGCACCAGAACAGGGGTCCATCTCCGTCACTTTCTTTCTGGTTTCGTAACGACTTCCCTCTCATCTTACTATGTCAAATATTCAGAGTGAATTGGGGTTGTACTCTTCTTCAGAGGCTAAGCAAAGACTACTTTGATACACATATGAGCGAAAGATGCAGGATATCAAAAAATAAGTGGAATTATGTGGAGTTTAGGATTCAAAGGGTCTTTGATTTTGGAATTGGAATCCATGTATTGAAAGAGCAAAACATGCAGGATATCCGATTCACGAATCCTGATAAAAGGAGAAAAATAGACTTGAATTTGGCACCGCTTGAAGAGGATGATGTTAATACTGAGTTGACTCACTTAAGCACAATCCTGGATCATTGCTCTTGGGCCTATATATTCTGA 2574 0.3842 MDVGSDDKVHMVGIHGIGGIGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLPHLQKIFLVDVLGEKEIEITSVGKGISMIQRRLQQKRVLLILDDVNKMEQLQGIIGRPDWFGRGSRVIITTRDKHLLAFHGVQSTYEVETLNNNDAFRLLKWKAFKDDKVRPNYEDMLNRAVAYASGLPLALEVIGSNLYGKNIHEWKSALEQYEKVPIRKIQQVLEVSFVALEKQEQSVFLDIACCFKGYNLKEVENILSAHHNQCIKYQIVVLVDKSLIKITDSGDVTLHDLIEDMGKEIVRQESPQEPGNRSRLWFHEDIFEVLEQNTGTSKIEMMHLDYLSFEEVNWDGEAFKEMKKLKTLVIRKTHFSKGPEHLPNSLRVLEWWKYPSQHLPSDFHPKKLSICILPYSSMVSLELGRSSKKFETMKVLNLDFCESLTEIPNLTGLPNLEELSFEFCSKLITIDCSVGLLAKLKSLNAGYCFQLRSFPSLKLPSLEKLYLHGCLSLESFPEILEKMENIRKLDLRCTNISKFPHSFGNLTRLLFMWVSDLRPSRSLDTMPELWLEISQRRIYYEDSESESEEEVMDGGAVELVPTFLNEKESSMLLPSKLECLTLEQCHLSDEYLVLVPSLFPNLQELDLMDCSSITVVPECIKECRFLRRLFLNRCEQLREICEGILPRLNKLVVCGCPSLSSSCRSMLVRQELGADVDIHLQLRNLEGETIPERFEHQNRGPSPSLSFWFRNDFPLILLCQIFRVNWGCTLLQRLSKDYFDTHMSERCRISKNKWNYVEFRIQRVFDFGIGIHVLKEQNMQDIRFTNPDKRRKIDLNLAPLEEDDVNTELTHLSTILDHCSWAYIF* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2389 857 Gene3D - 1 139 IPR027417 -
Lja2g2389 857 SMART AAA_5 8 147 IPR003593 -
Lja2g2389 857 Pfam NB-ARC domain 9 215 IPR002182 GO:0043531
Lja2g2389 857 Gene3D Ribonuclease Inhibitor 314 571 IPR032675 -
Lja2g2389 857 Gene3D Ribonuclease Inhibitor 594 709 IPR032675 -
Lja2g2389 857 SUPERFAMILY L domain-like 298 695 - -
Lja2g2389 857 Gene3D - 145 229 IPR042197 -
Lja2g2389 857 PANTHER ARCHAEAL ATPASE 8 793 - -
Lja2g2389 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 239 IPR027417 -
Lja2g2389 857 PRINTS Disease resistance protein signature 11 26 - -
Lja2g2389 857 PRINTS Disease resistance protein signature 87 101 - -
Lja2g2389 857 PRINTS Disease resistance protein signature 180 194 - -
Lja2g2389 857 PRINTS Disease resistance protein signature 629 645 - -
Lja2g2389 857 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 793 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2389 Lja-Chr2 29287319 29290322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2389 9 559 WRKY Transcription Factor Family AT4G12020 32.517 7.34e-66 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2389 - - lja:Lj0g3v0247409.1 1600.49