Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2378 ATGGATCCACAAACGTGTGAGCAATCCGCAAACGAATACGATTCTTCAGATTTCAAGTCTGAGAAGATTCTCCAAGCTGTTGATAAACCAATCATGTGCCCCACTCCTGAGAAGAAGATCGAACCCTTACCAGTCAAATCCAAGGATGAACAAACACAGCTTCCAGAAAAATACAGGACCATTGCTGATTTGTTTAGACATTTGAGTTGTTCACTTAGATTGCTGCATCTGCACAAAAAGCCTCAAACTTTTCAAAATATTTGCAAACAGGTCGAAGTTCTTGCGGAAAGAAAATTCTCCTATGCTCATCTTGCACGGATGAAGTATATACTTCCTGAAGGCATACTCGTAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGCCAGATATTAAGATTACCTTGGTATTTGATGTTGTTGAAGAACACTGCGAACTGTCTGCTGATATGGCTCTTCGACGATATTTTAATTCTAGACTGATTGATTATTTCAAAATGCACCCTGAGGCTGCTGATATTCCAGAGGCCATACTACCAGAACCCTGTGGCCAAAGAAGTTGTCACTTGATTTCGGAGGATTTCCCTGTAATTTCTTCGACAGCACTTTCCTCAACTTCCAACCAAATTGAACAGTCCCCTGAGAAGTTCAATTTGTATCCATCTTTTACAAGACATTTTTCTCAGAAGATTGTTGCTGACCAGACAGAAAAGGTTCATGACCTTTCATCCACTAAAACTTGTCTGTCATCTGATGTGTCTGATTGTCCTGACATCCCAGAATGTGAAAGAAAAGGGCAGAAAGAATGTGCAGCATTATCTGATCATTTGAATACAGAAAGAGGGCAGCAGAAGGAATCATTTTCAATATGTTATCAACCTAGTGTTACTAATACACCAGTTCGTATGTTTGGACATTCTGTTAGTCACGGAAATTCTGAAAGCCCTGAGGTGAAAATGGTCTCTTGCGTTGATAGTTTTGTGATAGAGACACCTGCACAATCAGCACCTGGGAGATTGTTGCCCGTTTCTGATGATAAGCTTCAAAACATGACTTACCCAAAGTCTACATCATGTTCTAAGACTGCAAAAAGAGTGCTTGACTTTTCAGGCATGGAAAGCAATGAAGGATTGGACAATAGAGTAGACATCTCAGAATCTAGCAGCGCTACACATGAATTTCATGGCATCCCTCAACCAAGCATAAGTTTTTCTGAGGATTGCAATTCTTTTGATTCTGTTGCTCTGCCTCTGGAGGTAGAGGAGAGCCTTGGTTACTCTTTTGAGAAAACTGACCAAAATCAAGGTGGTTTAGGGAATAAAAACATATCATCATTGGTGGATATGGTTAATGTGATTGGATCTATATTTCAATCTGTTAAAAGAACTCCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATTATGAACAGTTTGGATTTTGATGAGATTGGAGAAGTTGAAAAACAGATTGAGATTCTGGAAAAGTTGGTGCCGGACTGGATTTGCAAGAAGTTGGTTTCTTCTGGAGATGTTATGTACAGCATCAAGAAAGTGTCAGATTTGGACTCAGTTCGATCAAGGCTCTTCAGTAATGTGACCGTAGGAATTGAGTAA 1623 0.3974 MDPQTCEQSANEYDSSDFKSEKILQAVDKPIMCPTPEKKIEPLPVKSKDEQTQLPEKYRTIADLFRHLSCSLRLLHLHKKPQTFQNICKQVEVLAERKFSYAHLARMKYILPEGILVDKVLVHDKKSLCMKPDIKITLVFDVVEEHCELSADMALRRYFNSRLIDYFKMHPEAADIPEAILPEPCGQRSCHLISEDFPVISSTALSSTSNQIEQSPEKFNLYPSFTRHFSQKIVADQTEKVHDLSSTKTCLSSDVSDCPDIPECERKGQKECAALSDHLNTERGQQKESFSICYQPSVTNTPVRMFGHSVSHGNSESPEVKMVSCVDSFVIETPAQSAPGRLLPVSDDKLQNMTYPKSTSCSKTAKRVLDFSGMESNEGLDNRVDISESSSATHEFHGIPQPSISFSEDCNSFDSVALPLEVEESLGYSFEKTDQNQGGLGNKNISSLVDMVNVIGSIFQSVKRTPITKEELLQKIIMNSLDFDEIGEVEKQIEILEKLVPDWICKKLVSSGDVMYSIKKVSDLDSVRSRLFSNVTVGIE* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2378 540 CDD Cdt1_m 35 184 IPR014939 -
Lja2g2378 540 Pfam DNA replication factor Cdt1 C-terminal domain 444 504 IPR032054 -
Lja2g2378 540 PANTHER DNA REPLICATION FACTOR CDT1 13 533 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lja2g2378 540 PANTHER EXPRESSED PROTEIN 13 533 - -
Lja2g2378 540 Gene3D - 441 536 IPR038090 -
Lja2g2378 540 Pfam DNA replication factor CDT1 like 54 118 IPR014939 -
Lja2g2378 540 SMART CDT1_2 54 183 IPR014939 -
Lja2g2378 540 SUPERFAMILY "Winged helix" DNA-binding domain 49 184 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2378 Lja-Chr2 28837480 28842429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2378 53 531 Core DNA Replication Machinery Family AT3G54710 31.224 1.37e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2378 K10727 - gmx:102670055 590.882