Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2375 ATGGCACCCTCCTCCTTCACCTACGATGTGTTCCTCAGCTTTTGTGGAGTTGATACTCGATTCAGTTTCACTGGGAATCTTTACAAAGCTCTTCACGAGAGGGGAATCAACGCCTTCATAGATGACAAGAAGCTCGAGAGAGGGGAGGAAATCACACCGTCACTTCTCAACGCAATTGAACACTCCAAGATTGCCATCATTGTTCTCTCTGAGAACTACGCATTTTCGTCATTCTGTTTAGATGAACTTTCCAAGATCCTTGACTGCATGAAGGAAATGGGTCAGTTGGTCTGGCCAGTTTTTTATCAAGTGGATCCTTCTGATGTGCGGAAGCTGAGCGGGACTTATGGAGAAGCCATGGCTATGCATGAGCAGAGGTTCAAGGATAACTTGGACAGGTTGATCAATTGGAAGATTGCTTTGTATGAAGTGGCTAACTTGTCTGGATGGCATTTTAAGCATGGGGTATATGAACATGATCTTATTAGGAAGATTGTTGAAGAAGTAGCAAGAAAGATCAATCCTTTTGCTCTACCCATTGCTGATTACCCAGTTGGACTGGAGACCCAAGTGTCAGCCGTGATTTCACCTTTGGATGTTGAGTTGGATGATAGAGTCCACATGGTAGGGATTTATGGAACCGGTGGTATAGGTAAAACAACCCTTGCGCTATCGGTTTATAATTCGGTTGCCATCCATTTCGAAAGTTTATGTTTTCTTGAAGATGTTCGAGAAAACTCAAAAAGATATGGCTTACTATATCTCCAAAAGATCCTTCTTTCTAAAACAGTTGGAAGGGAGAAATTAACCAGTGTCAAAGAAGGAAGTTCAATAATACAACACAGGCTCCGACAAAAGAAGGTTCTTTTGGTTCTAGATGATGTTGACAAAATGGAGCAATTAGAGGCTGTTGCTGGAAGATCTAATTGGTTTGGTCCTGGCAGTAGAGTTATCATTACAACGCGGGATAAACACTTGCTAGAACGTCATGGGGTTGAAAGAACATATGAAGTGACCAATCTGAATGAGGATTATGCTTATGAATTGCTTACATGGAAGGCTTTCAAAACCGACAAGGTTGATCCAAGTTATGTGGATATTCTAAACCGTGCAGTAAATTATGCTTCTGGCCTTCCATTGGCCTTGGAAGTAATAGGCTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGGATTCTGCATTAGATTTGTATGAAAAGATTCCAAATAAAAAGATTCAAGAGACACTTGAAGTGAGCTTTTATGCTTTGGAGGAAGAAGAGCAGAGTGTTTTTCTTGACATTGCTTGTTTCTTCAAAGGATATAGATTGCCAAGGGTCAAGGAAATTCTTCAAGCTCATCATGGTATCAGATTGGAGTACCACATTGGAGTATTGGTTAAAAAATCTCTTATAAAGATTAGTCAATATGATGTTGTGACATTACATGACTTGATAGAGGATATGGGTAAAGAAATTGTTCGACGAGGATCACCAAATATACCTGCGGAACGTAGTAGACTATGGTCTGGTGAAGACATAGTTCAAGTTTTAGAAACGAACACGGGAACGAGTAAAATTGAAGTCATAATCCTGAGTTTCCGGTCATTTGAAAGAAAACCAAATAGCATACGTTGGGATGGAAAGGCTTTCATGAAGATGGAAAATCTCAAAACACTTATCATAAAAGATATTTCTTTTTCCAAAGCTCCCGAGTATCTTCCAAATAGTTTAAGATTATTGGAATGGGGGAAGTATCCTTCACTTAATTTTCCATCTGATTTTCATCCAAAGGAGCTTACCATATGCAAGTTAGACTACAGTGACTGTAACTCATTCAAGTGGGCTGGCTTCGTGAACAAGAAGTTTGAGAAGATGAGAGTTTTAAACTTGGATAACTGTACATGTTTAACTCAGACACCTGATGTATCTAGTCTCCCCAATTTAGAAGAATTTTCTTTTCAAAGTTGTATGAATTTAACTACAGTTCACCATTCAGTTGAATTCCTGGTTAAACTTAAAATCTTGAATGCTACCAGTTGCTTCGGGCTTAAGAATTTCTCATTCTTCCTCAAGTTGGCCTCGCTTGAAAAACTCCAACTATCATTTTGCTCTGGGCTTGAGAGTATTACAGAAATAGGAAAGGAGGGAAATATAGCACATCATCACTTGGAACAGACTCCCATTCAAAATCTTACTCCGCTTCAAACGTTACATGTGGATCACAATGGAATTTTTCATTTGCCAAATACTGTTGTGGGCGGGGGATGTCTATTGCCAAGACAGGATGAAGAAGTAGAAGTAGTGGGTTCAACTCGGTCTTCAAATGTGGAATATCTTGATCTCTCATATTGCTACCTGTCAGATGAATTTTTGGCAAAAGGCCTCAAGTGGTTTACTAATGTGAAAGAATTAGACCTTTCAAACAACAAGTTCACATACATTCCTGAATGCATCAAAGAATTTCAATTTTTATGGAAGCTTGTCTTGGCTGGTTGTATTGGGCTTCAGGAAATCAAAGGGATTCCGCCAAACTTAGAAAATCTTAGTTTGGATAACTGCAAGATATTTCAAGAACTTAGTCAACTTACACAGGTTCCACCGAGATTGAAAACTTTCTCTGCATTGAACTGTGAATCCTTGACTCCCTCATTTAAAAGCAAATTACTGAATCAGAAACTGCATGAGGCTGGAAACACCCAGTTTCGCTTGCCTCGAGCACAGATTCCATGTTGGTTCGAGCACCTGAGCACGGCAGGACGATCAATTTCTTTCTGGTTTCGAAACAAATTTCCAGATATGGCTTTCTGTGTTCTTTCTCCATTGACATGGACAAATTATGATGTAATTGTGATCATCAATGGCAAAAAGTTTTTCTATAGGGTTGGTACGTGTAGATTCATGCGGCCGGAATTGTACCATATACATCTTTTCCATATGCAAAAGGAAAAATTCAATGATAATATGGACAATGCACTCTTGGAAAATAAGTGGAACCGCGCAGAGGTTAACTTTAGGTTCGCATTCCATCAATGCGGAATCCATCTATTGGATGAGAAAAGTAGCATGGAGGATTTTCAATTCACCGATCCCTATGATAAGAGAGAGATATTTGACTTGAACTTACCACTACTTCGCGACGATGATGTTGATATGCATTTGTTACTGAACGTGTTCATTGCTATCAAATGTTTGTAA 3195 0.3925 MAPSSFTYDVFLSFCGVDTRFSFTGNLYKALHERGINAFIDDKKLERGEEITPSLLNAIEHSKIAIIVLSENYAFSSFCLDELSKILDCMKEMGQLVWPVFYQVDPSDVRKLSGTYGEAMAMHEQRFKDNLDRLINWKIALYEVANLSGWHFKHGVYEHDLIRKIVEEVARKINPFALPIADYPVGLETQVSAVISPLDVELDDRVHMVGIYGTGGIGKTTLALSVYNSVAIHFESLCFLEDVRENSKRYGLLYLQKILLSKTVGREKLTSVKEGSSIIQHRLRQKKVLLVLDDVDKMEQLEAVAGRSNWFGPGSRVIITTRDKHLLERHGVERTYEVTNLNEDYAYELLTWKAFKTDKVDPSYVDILNRAVNYASGLPLALEVIGSNLFGKSIEEWDSALDLYEKIPNKKIQETLEVSFYALEEEEQSVFLDIACFFKGYRLPRVKEILQAHHGIRLEYHIGVLVKKSLIKISQYDVVTLHDLIEDMGKEIVRRGSPNIPAERSRLWSGEDIVQVLETNTGTSKIEVIILSFRSFERKPNSIRWDGKAFMKMENLKTLIIKDISFSKAPEYLPNSLRLLEWGKYPSLNFPSDFHPKELTICKLDYSDCNSFKWAGFVNKKFEKMRVLNLDNCTCLTQTPDVSSLPNLEEFSFQSCMNLTTVHHSVEFLVKLKILNATSCFGLKNFSFFLKLASLEKLQLSFCSGLESITEIGKEGNIAHHHLEQTPIQNLTPLQTLHVDHNGIFHLPNTVVGGGCLLPRQDEEVEVVGSTRSSNVEYLDLSYCYLSDEFLAKGLKWFTNVKELDLSNNKFTYIPECIKEFQFLWKLVLAGCIGLQEIKGIPPNLENLSLDNCKIFQELSQLTQVPPRLKTFSALNCESLTPSFKSKLLNQKLHEAGNTQFRLPRAQIPCWFEHLSTAGRSISFWFRNKFPDMAFCVLSPLTWTNYDVIVIINGKKFFYRVGTCRFMRPELYHIHLFHMQKEKFNDNMDNALLENKWNRAEVNFRFAFHQCGIHLLDEKSSMEDFQFTDPYDKREIFDLNLPLLRDDDVDMHLLLNVFIAIKCL* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2375 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 434 IPR027417 -
Lja2g2375 1064 Pfam C-JID domain 903 1016 IPR045344 -
Lja2g2375 1064 Gene3D - 7 170 IPR035897 -
Lja2g2375 1064 Gene3D Ribonuclease Inhibitor 509 715 IPR032675 -
Lja2g2375 1064 Gene3D Ribonuclease Inhibitor 716 899 IPR032675 -
Lja2g2375 1064 SMART till_3 7 147 IPR000157 GO:0007165
Lja2g2375 1064 PRINTS Disease resistance protein signature 282 296 - -
Lja2g2375 1064 PRINTS Disease resistance protein signature 208 223 - -
Lja2g2375 1064 PRINTS Disease resistance protein signature 375 389 - -
Lja2g2375 1064 PRINTS Disease resistance protein signature 690 706 - -
Lja2g2375 1064 ProSiteProfiles TIR domain profile. 6 173 IPR000157 GO:0007165
Lja2g2375 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1005 IPR044974 GO:0006952
Lja2g2375 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Lja2g2375 1064 SUPERFAMILY L domain-like 545 880 - -
Lja2g2375 1064 Pfam NB-ARC domain 188 405 IPR002182 GO:0043531
Lja2g2375 1064 SUPERFAMILY "Winged helix" DNA-binding domain 410 518 IPR036390 -
Lja2g2375 1064 Pfam TIR domain 8 174 IPR000157 GO:0007165
Lja2g2375 1064 Gene3D - 171 334 IPR027417 -
Lja2g2375 1064 Gene3D - 340 424 IPR042197 -
Lja2g2375 1064 PANTHER ARCHAEAL ATPASE 18 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2375 Lja-Chr2 28762073 28776257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2375 4 829 WRKY Transcription Factor Family AT4G12020 29.755 5.00e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2375 - - gmx:100780257 1036.94