Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2374 ATGGCTCTGCTACCCTCCTCCTCCGCCAATGGATTCGCCCACGATGTGTTCCTCAGCTTTCGAGGGACTGATACTCGCCAAGGTTTCACTGGAAATCTGTATAAAGCTCTCCATGACAAAGGATTCCGCACCTTCATTGATGATGAGGAGCTTCACAAAGGGGAGCAAATCACACCATCACTTCTCAAGGCAATTGAACAGTCCAAGATTGCCATCGTTGTTCTCTCTGAGAACTACGCATCTTCGTCGTTCTGCTTGGAAGAACTTTCCAAGATCATTGACTGCATTGAGGAAAAGGGTCAGTTGGTCTGGCCGGTTTTTTATGATGTGGATCCTTCTGATGTGCGAAAGCTGACAGGAGCTTATGGAGAAGCAATGGCTAAGCATGAGGAGAGGTTCAAGGATCACTTGGAGAGGTTGCAAAAATGGAGGAAGTCTTTGCAGAAAGTAGCTAACTTGTCTGGATGGCATTTCAAACAAGGGGATGGATATGAATATGAGTTTATTGGTAAGATCCTTGAAGAAGTCTCAAGAAATATCAAATGTGTTACTTTACATGTTGCTGATTACCCAGTTGGATTGGAGTCCAAAGAGTCAAATTTCAAATTGCTTTTGGATGTTGGGTTTGATGATAGAGTTCACATGGTAGGAATCCATGGGATTGGCGGTATTGGTAAAACAACCCTTGCTCTATCAGTTTATAATTCAATTGCAAGCGATTTTGAAGGTTCTTGTTTTCTCGAAAATGTTGGAGAAAATTCAAATAGATATGGGCTACTACATCTTCAAAAGACCCTTCTTTCTAAAATAATTGGAAAAATGAATGTTGACTTAACAAGTGTTAAGGAGGGAAGCTCAATAATACAACATAGGCTCCGACAAAGGAAGGTTCTTTTGATTCTAGATGATGTCGACAAGCGGGAGCAATTGGAAGCTATTGTTGGTAGGCCGGAATGGTTTGGTCCCGGCAGTAGAGTAATTATTACGACACGGGACCAACAATTGCTAACAAGTCATATGGTTGAAAGAAAGTATGAGATGGGGGAGTTGAAGAATGAAGATGCTCTTAAGTTGCTCAAATGGAAGGCCTTCAAAACTAATGAAATTAGTCCAAGTTATGTTGACATTTTATCCCGTGTAGTAACTTATGCTGCTGGTCTTCCATTGGCTTTGGAAGTTATAGGTTCTTACCTGTATAAAAAAAGCATAGAAGAATGCAAACATGCATTAGATCGGTATGAAAAGATTCCCATTCAAGAGATCCAAAAGGTACTCAAGGTGAGCTATGATGCATTGGATGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAGAGGATATAAGTTGACAAAACTTGAAAAAATACTTCATGCTCATTATGATGACAACAAGAAACATCACATAGGAGTGTTGGCGGAAAAATCTCTAATTAAAATTATTGGGTTTGGTTATGTGACATTACATGACTTGATAGAGGATATGGGCAAAGAAATTGTCCGACAAGAATCTCCGGAAGAGCCTGGAAAGCGCAGTAGGTTGTGGTTTCATAAAGATATAGTTCAAGTTTTAAGAGAAAATACGGTGAGTGAGATTGGTATGGATAGTTTTGCCTTTCATCTTAAACTTCGACTTATCTCTTTTAACTATTACTGCTATGAATATTGA 1674 0.3967 MALLPSSSANGFAHDVFLSFRGTDTRQGFTGNLYKALHDKGFRTFIDDEELHKGEQITPSLLKAIEQSKIAIVVLSENYASSSFCLEELSKIIDCIEEKGQLVWPVFYDVDPSDVRKLTGAYGEAMAKHEERFKDHLERLQKWRKSLQKVANLSGWHFKQGDGYEYEFIGKILEEVSRNIKCVTLHVADYPVGLESKESNFKLLLDVGFDDRVHMVGIHGIGGIGKTTLALSVYNSIASDFEGSCFLENVGENSNRYGLLHLQKTLLSKIIGKMNVDLTSVKEGSSIIQHRLRQRKVLLILDDVDKREQLEAIVGRPEWFGPGSRVIITTRDQQLLTSHMVERKYEMGELKNEDALKLLKWKAFKTNEISPSYVDILSRVVTYAAGLPLALEVIGSYLYKKSIEECKHALDRYEKIPIQEIQKVLKVSYDALDEEEKSVFLDIACCFRGYKLTKLEKILHAHYDDNKKHHIGVLAEKSLIKIIGFGYVTLHDLIEDMGKEIVRQESPEEPGKRSRLWFHKDIVQVLRENTVSEIGMDSFAFHLKLRLISFNYYCYEY* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2374 557 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Lja2g2374 557 Coils Coil 126 146 - -
Lja2g2374 557 Gene3D - 188 346 IPR027417 -
Lja2g2374 557 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 531 IPR044974 GO:0006952
Lja2g2374 557 SMART till_3 13 153 IPR000157 GO:0007165
Lja2g2374 557 Gene3D - 349 433 IPR042197 -
Lja2g2374 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 443 IPR027417 -
Lja2g2374 557 PRINTS Disease resistance protein signature 384 398 - -
Lja2g2374 557 PRINTS Disease resistance protein signature 291 305 - -
Lja2g2374 557 PRINTS Disease resistance protein signature 215 230 - -
Lja2g2374 557 Pfam NB-ARC domain 214 433 IPR002182 GO:0043531
Lja2g2374 557 Gene3D - 8 187 IPR035897 -
Lja2g2374 557 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Lja2g2374 557 Pfam TIR domain 13 178 IPR000157 GO:0007165
Lja2g2374 557 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 531 - -
Lja2g2374 557 SUPERFAMILY "Winged helix" DNA-binding domain 420 526 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2374 Lja-Chr2 28750090 28754459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2374 213 517 WRKY Transcription Factor Family AT5G45050 33.442 7.31e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2374 - - lja:Lj0g3v0302529.1 1045.8