Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2371 ATGAGAAATAAAAAATCTTCTTTCTCTTACTTCAACCATGGTTGGACTTATGATGTGTTTGTAAGCTTCCATGGGAAAGACACTCGTTTCGGTTTCACAGGCTACCTCTGTAACGCCTTGTACCAGAAGGGAATCAACGCTTTCAAAGATGACATCAAACTCAAGAAAGGAGAAGGGATTTCACCAACTCTTCTCAAAGCAATTGATGAGTCCAGGATTTCCATCATTGTTTTCTCCGAAAACTACGCGTCTTCAACTTGGTGCCTCGATGAACTTGTTAAGATTATTGAGTGTATGAAAGAGAAGGGACAGTTGGTCCAGCCGGTTTTCTACTATGTTGACCCTTCAGATATACGGCATCAGAGGGGAAGTTTTGGAACATGGATGACTAAGCATGAAGAAAATCCCAACATTAGCAAAGAAAGAGTGAGGAAATGGAGAACTGCGCTCTCAGATGCAGCAAATCTGTCAGGATGGCATTTCAAAGATGGGAATAACTATGAGTTTGAATGTATTCAAAGGATTACTGAAGTTATATCGATCGAATTAAATCATACCTCATTACACGTAGCTGATCATCAAGTTGGATTGAATTATCGAATGTCAGAAGTTAAAACACTTATAGGAATCGAGTCTAATAATGATGTTCGCATGGTTGGAATTCATGGCATTGGTGGAGTTGGCAAAACAACAATTGCTAGAGCTATGTATAACTCAATTGCTGGCAAGTTTGATTGTTCAAGTTTCCTTGCTGATGTAAGAGAAAATTCAATAAAACATGGTCTAGTAAAACTGCAAGAGACCCTTCTGCTTCACTTGCTTGGAGAAAATATCAACTTGGGTGATGATGTGAGCAGAGGAATTCCTATAATTGAAAGAAGGCTTCGCAACAAGAAGGTTCTTTTGATTCTCGATGATGTGGATGATCTAGAACAGTTGCGATCATTGGCGGGAAGACACGATTGGTTTGGTTTTGGAAGTAGGATTATCATAACAACAAGAGATAAGCATTTGCTAGATGCACATGGGGTTAAAAAAGCATATAAAGTGAAGGAGCTGAATGATCTTGAAGCTATTGAACTATTCAGCTTCAATGCTTTTAAAAGAAAGGACCCTGATGCAAGTTATGTGGAGATAACAAACAGACTAGTGCAATATGCCAAAGGCCTTCCATTGGCTTTGAAAGTCATAGGTTCTGATTTGTTTGGCAAGACAATAGAAGAATGGGAAAGTGCATTGAAGAAATATGAAACAATGCCAAGCAAAAAGATTATAGATGTTCTCAAAGTGAGCTTTGATAATTTAGAAGATAATGAAAAAGAGATTTTCCTTGATATTGCATGTTTCTTCAAAGGGTATTTCAAGGGGGATGTAGAAAAGACACTAGATGCTTCTCGCTTTTTTTCAAAGTATGGCATTGGAGTGCTTATTGACAAGTCTCTAGTGACAGTTGGTGAAGCCAATACACTTAAGATGCATGATCTTATTCAAGACCTGGGTAAAGACATTGCTAGACAGGATTCACCATTTGACCCTGGCAAACGCAGAAGATTGTGGCATCATGAGGATGTTCTTGAAGTCTTGACAAAAAACACGGGAACCGAAAGAATTGAAGGCATAATGTTGGACATGCACAACCTAAAACAAGAAGTGCAGCTAAAAGCCAACACCTTTGATAATATGATCAGACTTAGAATCCTCATAGTTCGAAATGGACAAATTTCTGGATCCCCCCAAAATCTCCCAAATAATTTGAGATTGCTTGAGTGGAATGAATATCCTTTATCATCTTTGCCAGTTGATTTTCATCCAAAGACACTTGTTGTACTCAATTTGCCCAAGAGTCAACTAATAATGGATAAGCCATTCAAGAACTTTGAGAAATTGACTTTTATGAACTTCAGTGATTGTGATTCCCTAGCAAAACTACCTGATGTCTCAGCAACCCCAAATCTAACAAGAATTCTTGCTAACAATTGTTCAAACTTGGTTGACATTCATGATTCTGTTGGACATCTTGACAAACTAGTCACATTGAGCACTCAAGGATGCCCTAAACTAAAGAGTTTTCCACGCAGCTTGAGATCAAAATTTCTTGAATACCTTAATCTTAGCAAGTGTTCCAACATTCAGAGTTTCCCAGATGTAATGGAAAAAGTAGAAAGTATGAAAAATATTGATATAGGAGGGACTGCCATAAAAGAGTTTCCAAGTTCAATGGAAAACTTCAATGGTCTTGAAGAACTAGTGTTGACATCTTGCCTAAGTTTGGAGGATCTACCTAGTAACACAGATATGTTTCAAAATATTGAAGAGCTTAATGTCAAAGGATGTCCACAAATTCCTAAAATTTTATGGAAGTCATTAGAAGACAAGAGGCATCCAAAGCTAAGTAGACTAACCCTCACAAGTTGTGATATATCAGATAAAGATCTTGAGTTAATCCTTACTTGCTTTCTACAATTAAAGTGGTTGATTCTATCAGATAACAACTTCTTAACCATCCCTGATTGCATTGAAGACCTTTCTCACCTCTTGCTTCTTCATGTGGATAACTGCAAGCAGCTTAGAGATATTTCAGTACTTCCACTATACTTGCAATACATAGATGCAAGGAACTGCACATCATTGACTCCCCAATCATCAGATGTAATATTGAGCCAGGCATTTGAGGAGATTCCATACATAGACATTGTGGTGCCAAGGAAAAATATTCCAAGTTGGTTTGATCATTGTAGCAAAGGAGGGTCTGTGGCCTTTTGGGTTCGAAGAAAGTTCCCTGCAATTGCTCTATTTTTTCTTTTGAGTGGTGAAGATGAAAGGAAAACTGATTATCCATGTGAATTCTATTTACTCATTAATGGCCTCCAAGTTTACCAAGGAAGAAGAGAGTGGCCAATTGATCATGTATGGCTATTTGATCTGCGAGTCAAACTTACCGCCAGCGAGTGGCAGGGGTTCAATGAACAAATCAAGTCTGGTTGGAATCATGTCGAGATTTCGTGTTCAGTCTTGAACGAGCTGAAAAATGCAACTGTTAAAAGGTGTGGAATTCATCTATACAAAGATAGAATGAACATCCACCATGTTTCCTTCATAAGTCCTGATCTTCATGGCTCAAATATGGCCTTTGATAACATAAATGACAATTTGGATGTCTATGATGAAGTACGAGATGATGTTGTTTTCCCCACAATACTTGCTAAATATTTTAACAAGAGTATACTAGAGGTCATGGGAAATCTTCAATCTAGCAGGAGAAATGATGATTACGGGTATGACTATGATGAGGAGTTGGAGCTAGAGAGTGACAATGACCCTGACAACCAGCACATGGAAGAGGAACAACATTCAGATTCTCTCAATCATCTAATCCTGGAAAACTCTGAACTTATGAACAACAACAAAGGAAAAGAAACACTTGAAGAACCTCTTGTTACGACAATCCACGTGAAGGAGCCAACACTTGCACATATAGCAAAGCTAAAAGATAATGGAGATTTTGCACCTGAGTCAAGTGCCCCTGCATCAGGTAGAAACAAGGGAACAGAACTGGAAGATAAAATCACTTCTGGAGAACATACTAATATTGGCTTCACATGTAGCAACCACATGTCAAGAAATCAAGTTGATTCAAATGTAGAAGAAGCCACATTGCATCTTATTAAAGATCTAGCAGATATCTATGAAACTCATATTTCTGAAGGAAAAGGTGATGGTCAACAACCAATGCCAAGTGCAGAAGCCTATTTAAATATTTTTCAGTCTACCATAAATGAAGACAACATGGAAGCATTTTATGCTTCTCTTGAAGCTGAGAATACTTCTCCATCACATGTCCAAGACACGCAACTTAACAATGTATCTTTGAGAACTAGGCCTAGTGAAGAAACCCAGAAAGCATTGCAGACTCTCCGAGACTTTGTCTCGAAAAAATTCTCTCTTTTATTGCACCCGGGACGTTCTGGAAAGATGAAAGATATTCTAAAACATCTCCTCAGTTTGCCACCGGATGAGGGAATTTCCCTCAGAACAAAATCAGTTATACAACAACTTTCTCAAAGTTTTTCTCAGTGGAGTTTGGATTATAACAATGCAAACCTTAAACATGAGACATCAACTGCAGATTTATCAAAAGCTCAGAAACTGAAACATGATCTTGAAGCTAATGCTGAAGAATTCAGGGAAATGGACATGGTGGAGAGATGTTTGTGTGATCAGTTGGCCTCCTTGGAAGAAAAAAAGAGGGAGCTTGAAGAGAAAATCAATGCAGTGAAATCTGAGATGGCAGATTTTGCATCACAGAAAGACATGGTTGCTAAGAGAAAGAGAGAACTGTTTAACAAAGGAATTGTGATGAAAGATGAAAGGGATGATTTGGGGAACCAAGTGCCAGGGTTGAAAGCTGAGCAGGAATGGGCAAAGACTATACAAGCTAATATTGAAGAAGAATGGTCTAAGCTTGGAGAAAAACTCATTGGAACTTGGGGTGAAGCTCTGGATAAGCATGAGGAGAGGTTGAAGAATGATGATGGTTTGGAGAGGTTGAACAAATGGAAGATGGCTCTTCAGGCAGCGGCTGGAATGAACGGCACCCATCTCACCAAACACGGGTAA 4617 0.3857 MRNKKSSFSYFNHGWTYDVFVSFHGKDTRFGFTGYLCNALYQKGINAFKDDIKLKKGEGISPTLLKAIDESRISIIVFSENYASSTWCLDELVKIIECMKEKGQLVQPVFYYVDPSDIRHQRGSFGTWMTKHEENPNISKERVRKWRTALSDAANLSGWHFKDGNNYEFECIQRITEVISIELNHTSLHVADHQVGLNYRMSEVKTLIGIESNNDVRMVGIHGIGGVGKTTIARAMYNSIAGKFDCSSFLADVRENSIKHGLVKLQETLLLHLLGENINLGDDVSRGIPIIERRLRNKKVLLILDDVDDLEQLRSLAGRHDWFGFGSRIIITTRDKHLLDAHGVKKAYKVKELNDLEAIELFSFNAFKRKDPDASYVEITNRLVQYAKGLPLALKVIGSDLFGKTIEEWESALKKYETMPSKKIIDVLKVSFDNLEDNEKEIFLDIACFFKGYFKGDVEKTLDASRFFSKYGIGVLIDKSLVTVGEANTLKMHDLIQDLGKDIARQDSPFDPGKRRRLWHHEDVLEVLTKNTGTERIEGIMLDMHNLKQEVQLKANTFDNMIRLRILIVRNGQISGSPQNLPNNLRLLEWNEYPLSSLPVDFHPKTLVVLNLPKSQLIMDKPFKNFEKLTFMNFSDCDSLAKLPDVSATPNLTRILANNCSNLVDIHDSVGHLDKLVTLSTQGCPKLKSFPRSLRSKFLEYLNLSKCSNIQSFPDVMEKVESMKNIDIGGTAIKEFPSSMENFNGLEELVLTSCLSLEDLPSNTDMFQNIEELNVKGCPQIPKILWKSLEDKRHPKLSRLTLTSCDISDKDLELILTCFLQLKWLILSDNNFLTIPDCIEDLSHLLLLHVDNCKQLRDISVLPLYLQYIDARNCTSLTPQSSDVILSQAFEEIPYIDIVVPRKNIPSWFDHCSKGGSVAFWVRRKFPAIALFFLLSGEDERKTDYPCEFYLLINGLQVYQGRREWPIDHVWLFDLRVKLTASEWQGFNEQIKSGWNHVEISCSVLNELKNATVKRCGIHLYKDRMNIHHVSFISPDLHGSNMAFDNINDNLDVYDEVRDDVVFPTILAKYFNKSILEVMGNLQSSRRNDDYGYDYDEELELESDNDPDNQHMEEEQHSDSLNHLILENSELMNNNKGKETLEEPLVTTIHVKEPTLAHIAKLKDNGDFAPESSAPASGRNKGTELEDKITSGEHTNIGFTCSNHMSRNQVDSNVEEATLHLIKDLADIYETHISEGKGDGQQPMPSAEAYLNIFQSTINEDNMEAFYASLEAENTSPSHVQDTQLNNVSLRTRPSEETQKALQTLRDFVSKKFSLLLHPGRSGKMKDILKHLLSLPPDEGISLRTKSVIQQLSQSFSQWSLDYNNANLKHETSTADLSKAQKLKHDLEANAEEFREMDMVERCLCDQLASLEEKKRELEEKINAVKSEMADFASQKDMVAKRKRELFNKGIVMKDERDDLGNQVPGLKAEQEWAKTIQANIEEEWSKLGEKLIGTWGEALDKHEERLKNDDGLERLNKWKMALQAAAGMNGTHLTKHG* 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2371 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 446 IPR027417 -
Lja2g2371 1538 Gene3D - 352 436 IPR042197 -
Lja2g2371 1538 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Lja2g2371 1538 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 962 1306 - -
Lja2g2371 1538 Coils Coil 1377 1397 - -
Lja2g2371 1538 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 960 IPR044974 GO:0006952
Lja2g2371 1538 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 962 1306 IPR044974 GO:0006952
Lja2g2371 1538 Gene3D Ribonuclease Inhibitor 540 696 IPR032675 -
Lja2g2371 1538 Coils Coil 1401 1435 - -
Lja2g2371 1538 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Lja2g2371 1538 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Lja2g2371 1538 Gene3D Ribonuclease Inhibitor 697 896 IPR032675 -
Lja2g2371 1538 PRINTS Disease resistance protein signature 218 233 - -
Lja2g2371 1538 PRINTS Disease resistance protein signature 840 856 - -
Lja2g2371 1538 PRINTS Disease resistance protein signature 294 308 - -
Lja2g2371 1538 PRINTS Disease resistance protein signature 387 401 - -
Lja2g2371 1538 Pfam NB-ARC domain 211 422 IPR002182 GO:0043531
Lja2g2371 1538 Pfam TIR domain 17 186 IPR000157 GO:0007165
Lja2g2371 1538 Gene3D - 188 350 IPR027417 -
Lja2g2371 1538 Gene3D - 11 187 IPR035897 -
Lja2g2371 1538 SUPERFAMILY L domain-like 558 880 - -
Lja2g2371 1538 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 960 - -
Lja2g2371 1538 SMART till_3 16 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2371 Lja-Chr2 28668099 28678527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2371 4 830 WRKY Transcription Factor Family AT4G12020 30.888 1.76e-95 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2371 - - lja:Lj2g3v0582820.1 2947.15