Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2370 ATGGCTCAAGAGGAATCATCAAGGCATCCTGGCAACCTAAGTAGGGTATGGTTCGGCAATGAATGGACTTACGATATTTTCCTTAGCTTTAGTGGTCTAGATACCCGGACTGGTTTCATTGGCTATCTCTATAATGCTCTGGTTGAAAAGGGGATTTGCTCATTCATTGGTGATATGGAGCTTCAGAGAGGGGAGAAAATAACACTAGGAACTCGCAAGGAAATTGAAGAGTCTCGGATTGCCATTATTGTGCTTTCGAAATGCTATGTATCTTCTTCATACTGCCTAGATGAACTTGCCAATATCATTGAGTGCATTCAAGGGAAGGGTCAGTTGGTTTTACCTATTTTTTATGATGTGGATCCTTCTGATATACTACATGAGAGAGGTAGTTGTGGAGAAGCATTGTTTAATCATGAGAAGAAGTTCAAGGATAACCAGGTGAAAGTGATCAAATGGAGGACGGCATTGCTTCAAACAGCTAACTTGTCTGGTTGGCATATCAAACATGGGGGTGGATATGAATATGAGTTTATTGAGAGGATTGTTGAAGAAATCTCAAGAAAAATTAATCGTGTTCCTTTGCATGTTGCTGATTACCCAATTGGATTGAGGTCTCAAGTGCTGGAAGTAAAGTCAATTCTGGATGTTGGGTTTGATGATGGAGTCCTCATGGTAGGTATCCATGGCATTTGTGGGATAGGTAAAACAGCAATTGCTCGAGCAGTTTATAATTTGATTGCCGACCATTTTGAAAGCTTGTGTTTTATAGAAAATGTGAAAAAAAATTCAAACAAACATGGGTTAGTACATCTTCAGGAGATCTTTCTATCTAAAGTAGTTGGGGAGAAGAAAATTAAGTTAGTAAGTGTCAAACAAGGAATTTCAATAATAAAGCATAGGCTTCAGCGAAAAAAAGTTCTTTTGATTCTTGATGATGTTGACAAACTAGAGCAAGTGGAGGTCACTGCTGGAGGATCTGATTGGTTTGGTGCTGGCAGCAGAATTATCATTACAACTCGGGACAAAGAGTTGCTAGCAACTCACGGGATAAAAAGGATATATGAGGTAAAGAAGTTAAACAGGAAAGAAGCTTTTCAATTGCTTAGTTGGAAAGGTTTTAGAACTAACAACGTCGCTCCAAGTTATAGGGAGATTGCAGACAGTGCAGTAACTCATGCTTCTGGCCTTCCATTTGCTTTAGAACTAATGGGTTCAAACTTGTTTGGAAGAAGTATAGAAGAATGCGAATCTTCATTCACTGGATATGAATTAATGCTTGCTAAAGGAATCCCAGACATACTTAGAGTTAGCTTTGATGGTTTGGATGAAGTAGAGAAGAATATTTTTCTTGACATTGCTTGTTTCTTCGAAGGATATGAATTGGCAGTGGTTGAAAATATACTTTGTGCTCATTATGGTGTCGACATGAAATATGGTATTAGGGTGTTAGCTGAAAAAACTCTCATAAAAATCAATCAGTTTGGTGAGGTGACTTTGCCTGATTTGATGCAAGACATGGGTAGAGAAATTGTTCGCCAGGAATCTCCGGAAGAGCCTGGCCAACGCAGCAGGTTATGGTTCTATGAGGATATTGTTCATGTTTTAGAAGAAAATACGGGAACTAGTCAAACTCAAATCATAATTCTGGAATTCCCCTTATTTAAAGAAGAAGTAGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGCAAGACCTCAAAACGCTAATTATTAGAAATGGTTGTTTTTCCAAAGGTCCAAATCATCTTCCAAATAGTTTAAGAGTGCTGGAATGGGAGGGATATCCTTCACAATCTTTACCATCTGATTTTCATCCGGAGAAACTTGCGATATTCAAGCTAGCTAGTATCTTCTTCATGTCACTCGAGTTGCTCAACTTACATAAGGCAATTTTGGGTATTGATGAGTGTGAATCTATAACACAAATACCTGATTTTTCTGGTCTCCCAAATTTAGAAAAACTATCATTTGTATATTGTGAGAATTTAATCAAAATCCACGAGTCAGTTGGATTCTTGAATAAACTTAGAATCTTGGATATTGAGGGTTGTTGCAAGATCAGGACTTTTCCACCCATGAAGTTGGCCTCTCTTGAAGAACTGTATCTTTCACATTGCTCAAGCCTTGAGAGTTTTCCAGAAATATTAGCAAAGATGGAAAACATAACACTTATTGGTGTGTACCACACTCCCATAAAGGAACTGCCATCTTCGATTGGAAATCTCACTCGGCTTCGAAGGTTAGAACTGCATGGCTGTGGAATGCTTCAGTTACCAAGTGGCATTGCAATGTTGCCAGAACTTGAGGAGCTGAGTGTTTGGCAATGCGAAGGGTTGCAACCATTTAATCAGGACGGATGTGAAGAGAAAATGAGCTCAACCCTGAAACAACTTGATTTTTTGGCTTGCAATATATCAGATGAAGTCCTTCGAACAGCTCTTGCTTGGTTTACGAATGTGAGAGAGTTAGACCTGTCATTGAATATTTTCACAACTCTGCCTGCATGCTTCAAAGAATGTTTCTTTTTGAGGAAACTCACCGTGGATTATTGTAAGCATCTTCAAGAGATTAGAGGGATTCCACCCAACTTAGAAACATTCTCCGCAAAATGGTGCACATCCTTGAATTATATAGACCTCACAGTTCATCTTGCAGGCATCAAAAGAAGTAGCTTTGTGAGGGAACTTATTGTGGATGATTGTGAAAATCTTCGAGAAATCATAGGGATTTCTCCATACATAGAACTTTTGTCTGCAACATATTGCACATCCTTGATTTCATTGTGTTCAAGCATGTTACTGAATCAGGAATTGCATGAGGCTGGAAACAAGAGATTTTGTTTGCCTGGAACAAGGATTCCAAGGTGGTTTGAGCATTGTACGAGGGGACCATCAATTTCTTTCTGGTTTCGTAATGAATTCCCTGCATCCTTATCCCTCTGTCTTGTTGGACTTGTGCATGTGCACCCTGTCAGGTTCAGACCCATGATGATCATCAATGGCAATAAAATGAGGACAGAGTTCCTAACTGAAAAATGGTTTAATTTTGAGTTCCTAGTAGGAACTGATCATATGCTTATTTTTGGTGAAAAACAGATAAAATTCAAAGATAATTTGGTTGAAGTACTTTTAGAAAATGAATGGAATCATGTGGTGGTTTCAATTGATATTGATCTTACATTGAACCCAACAGTATTATCTGTTATCCAAACTGGACTCCACATTTTCAAACAAAGTAGCATGGAGGATATCCGATTCTCCGATCCTTACGATCAACCATTTCTGAAAGTAAAGCATGGTGGGGGAGTTTCCCAGAGACAGTTCATACAAAAACAAAATAAGTTGTCTTCATTGGAAACATCTCTAGGTGTGTTGAAGTCATGCAGTAGCACCACCAGTGTCCAAGACGAAAGGCAAAACAATACTCCCTCCGTCCCTAATTATAAGCTAACATTGAGACATATGTGGTGTCACTAA 3498 0.3882 MAQEESSRHPGNLSRVWFGNEWTYDIFLSFSGLDTRTGFIGYLYNALVEKGICSFIGDMELQRGEKITLGTRKEIEESRIAIIVLSKCYVSSSYCLDELANIIECIQGKGQLVLPIFYDVDPSDILHERGSCGEALFNHEKKFKDNQVKVIKWRTALLQTANLSGWHIKHGGGYEYEFIERIVEEISRKINRVPLHVADYPIGLRSQVLEVKSILDVGFDDGVLMVGIHGICGIGKTAIARAVYNLIADHFESLCFIENVKKNSNKHGLVHLQEIFLSKVVGEKKIKLVSVKQGISIIKHRLQRKKVLLILDDVDKLEQVEVTAGGSDWFGAGSRIIITTRDKELLATHGIKRIYEVKKLNRKEAFQLLSWKGFRTNNVAPSYREIADSAVTHASGLPFALELMGSNLFGRSIEECESSFTGYELMLAKGIPDILRVSFDGLDEVEKNIFLDIACFFEGYELAVVENILCAHYGVDMKYGIRVLAEKTLIKINQFGEVTLPDLMQDMGREIVRQESPEEPGQRSRLWFYEDIVHVLEENTGTSQTQIIILEFPLFKEEVVEWDGEAFKKMQDLKTLIIRNGCFSKGPNHLPNSLRVLEWEGYPSQSLPSDFHPEKLAIFKLASIFFMSLELLNLHKAILGIDECESITQIPDFSGLPNLEKLSFVYCENLIKIHESVGFLNKLRILDIEGCCKIRTFPPMKLASLEELYLSHCSSLESFPEILAKMENITLIGVYHTPIKELPSSIGNLTRLRRLELHGCGMLQLPSGIAMLPELEELSVWQCEGLQPFNQDGCEEKMSSTLKQLDFLACNISDEVLRTALAWFTNVRELDLSLNIFTTLPACFKECFFLRKLTVDYCKHLQEIRGIPPNLETFSAKWCTSLNYIDLTVHLAGIKRSSFVRELIVDDCENLREIIGISPYIELLSATYCTSLISLCSSMLLNQELHEAGNKRFCLPGTRIPRWFEHCTRGPSISFWFRNEFPASLSLCLVGLVHVHPVRFRPMMIINGNKMRTEFLTEKWFNFEFLVGTDHMLIFGEKQIKFKDNLVEVLLENEWNHVVVSIDIDLTLNPTVLSVIQTGLHIFKQSSMEDIRFSDPYDQPFLKVKHGGGVSQRQFIQKQNKLSSLETSLGVLKSCSSTTSVQDERQNNTPSVPNYKLTLRHMWCH* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2370 1165 Pfam TIR domain 24 192 IPR000157 GO:0007165
Lja2g2370 1165 ProSiteProfiles TIR domain profile. 22 190 IPR000157 GO:0007165
Lja2g2370 1165 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 883 IPR044974 GO:0006952
Lja2g2370 1165 Gene3D Ribonuclease Inhibitor 561 727 IPR032675 -
Lja2g2370 1165 PRINTS Disease resistance protein signature 225 240 - -
Lja2g2370 1165 PRINTS Disease resistance protein signature 301 315 - -
Lja2g2370 1165 PRINTS Disease resistance protein signature 394 408 - -
Lja2g2370 1165 PRINTS Disease resistance protein signature 700 716 - -
Lja2g2370 1165 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 894 1061 IPR044974 GO:0006952
Lja2g2370 1165 PANTHER ARCHAEAL ATPASE 34 883 - -
Lja2g2370 1165 Gene3D Ribonuclease Inhibitor 728 989 IPR032675 -
Lja2g2370 1165 Gene3D - 20 186 IPR035897 -
Lja2g2370 1165 Pfam NB-ARC domain 210 409 IPR002182 GO:0043531
Lja2g2370 1165 Gene3D - 187 352 IPR027417 -
Lja2g2370 1165 Gene3D - 359 443 IPR042197 -
Lja2g2370 1165 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 169 IPR035897 -
Lja2g2370 1165 CDD AAA 202 342 - -
Lja2g2370 1165 PANTHER ARCHAEAL ATPASE 894 1061 - -
Lja2g2370 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 453 IPR027417 -
Lja2g2370 1165 SMART till_3 23 163 IPR000157 GO:0007165
Lja2g2370 1165 SUPERFAMILY L domain-like 552 924 - -
Lja2g2370 1165 SUPERFAMILY "Winged helix" DNA-binding domain 431 537 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2370 Lja-Chr2 28653619 28658626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2370 18 830 WRKY Transcription Factor Family AT4G12020 31.915 2.43e-87 310