Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2365 ATGACACAACACATGGCTGCCTCATCCTCCTCCTCCACCTCTTCTTTCAGCAATGGGTGGGTTTACCATGTTTTCTTGAGCTTTAGGGGAGAAGATACACGTGAGACTTTTACTGGCAACCTTTACAGTGCCCTTGATCAAAGGGGAATCAACACTTTCATAGATGATGAGGAGCTGAGGATTGGGGAAGAGATTTCACCATCTCTTCTCAATGCAATAGAAGAGTCTAGGATCGCCATCATCATATTCTCCAAAAACTATGCCTCGTCCACTTGGTGCCTGGACGAACTTGTCAAGATTCTTGAGTGTAAGAAACACAAGGGACAGGGGGTTTGCTCAATTTTCTATAATGTGGATCCATCAGATGTGCGGCATCAGAGAGGGAGTTATGAAGAAGCATTTGTTATGCTTGAAGAAAAATTCAAAGACAACAAGGAGAAGGTGCAAAAGTGGAGGTCAGCTTTGTCTGAAGCAGCCAACCTGTCCGGCTGGCATTTCAATAGAGGGTACGAGTATAAATTTATCCAAAGAATCGTTGATGAGGTGTCAAGGAAATTGAATTGCATCCCTCTAAATGTTGCTAGACACCCTGTTGGACTCCGAGCTCGTGTATCGGATGTTAACTCACTCTTAGAACTTGGTTGCTATGATGTTAGAATGGTAGGGATTTATGGCATTGGCGGAATTGGTAAAACAACCATTGCTAAAGCTGTGTACAACACAGTATGTGATCAATTTCAATATGCCAGTTTTCTTGCAAATGTCAGAGAAAATGCAAGCCATAGAACTGGCTTAGTCAAACTCCAAGAGCGGCTTCTGTTCGAGATACTTGGTGATAAAACAATAAAGTTGGGCAATGCTGACAGAGGAATCAATATAATAAAAGATAGGCTATGCAGAAAAAGAGTTCTATTGGTTATTGATAATGTGGATGATGTGGACCAACTAGAAGCATTAGCAGGAGGATTTGATTGGTTTGGTCCTGGAAGCAGGATTATCATAACTACAAGAGATAAACATCTTCTAACTGCACATCAAGTTGATTTGACTTATGAGGTTAAAAAGTTAAATCATGTTGAAGCTCTTCAACTATTTAGTTGGAATGCTTTTAAACGAAGTGAGCCTGATGTAAGTTATCTTGAAATCTCAAATCGTGCAGTGTGTTATGCAGAAGGTCTTCCATTGGCTTTAACAATACTAGGTTCTGATCTGTGTGGTAGAAGCATTCATCAATGGGAATCTGCATTGGACAAATACAAGAGAACTCCTAATAGGAAAGTTCAGGATATACTGAGAATAAGCTTCGATGGGTTAGAGGAAAATGAAAAGGAAATTTTCCTCTATATTGCATGTTTCTTCAAAGGAGAGATAATGGAATACGCGGTAAAAGCATTACGCGCTTGCAATCTTCACCCAGCTATTGGTATTGCTGTGCTTGTTGATAAGTCTCTCATAACTATGGATGAAATATATGTATTGTCGATGCATGATCTTATACAAGATATGGGTAAGGAAATTGTTAGGCAAGAATCACCATTAGATCCAGGAAAACGCAGCAGGCTTTGGTATTATGAGGATGTGCTTCAAGTACTGACCGAAGGAACGGGAACTGATAAGATTCAAGGTATAATGCTGAATCTACCTGAAAAGCAAGAGGTGCAGCTAGAATCTCAAGTCCTAAAGAAGATGAAAAACCTTAGAATGCTAATAGTTCGCAACGCTGAATTTTTCGGAGGTCTTGTAGATCTACCAAGCAATCTAAGGCTGCTTGACTGGGAGGAATACCCTTCTCCAAGTTTCCCATCTGAGATACTTCCAGAGAAAATTGTAATGCTAGAGCTGCGGCGCGGTCATCTAACTTTGGACATGCCATTCAAGAAATATGCAAATCTGACTTCTATGAATTTTAGCTCTTGTGAATTGCTGACAAAAATACCTGATGTTTCTGGGATCCCAAATTTAGAGCAATTGATTCTTGAAGATTGTAAAGGTTTACTTGAAATCCATGAATCCCTTGGATCACTTGATAAACTAGTTTATTTAGGTGTTGAAAGGTGCACTGAGCTAAAGAATTTACCGAGCAATCTCAAGTTGCCATCTTTAGGATGCATTGTTCTTAATGGGTGCACTCAACTTGAGAAGTTCCCAAATTTGTTGGGAAAAATGGAAAATCTGAAAATGATCGAGGCGGAAGAGACAGCTATACAAGAATTGCCTTCTAATGTGGTCAATTTTATCAGCCTTGAGGTTTTAACACTAAAGCGTTGCTCAAATCTTAAGGAACTTCCTAGAACCATTGATATGTTGCCAAATCTTCAGTTACTTGATATTTCTGGCTGTCCCCAACTTCAACTGTTTCCAGAGAAAATCAGTTGTTTCAGCACCCAAAACTACTCAACCATGCTTCCAGAGTCTGATGAAAGTTCATCAAACGTAGTCTCTCCAGGTATCCAATCCTCATATCGGTTCCCTTTAATGGAAAACCTTGATCTCAGTGACTGCAATCTCTCAGATGGAGATCTACATAACCTTAGTTGCTTTTCCCACCTCATATCATTAGACATATCAAGAAATCATTTTGTAGCCCTACCCGAATGCTTCAACGGACTTGGTAGCTTGGAGGAGCTTTACATGGCCAATTGCAGGAATTTTCGACAAATTTCAGGGATTCCACCTAACTTGGAACTTATAGATGCTACTAGTTGCACACTGTTGAATTCACAATCCTTGAACCTGCTATTAAGCCAGGGATTCCATAAGGAATCGAAATTCGAAGTTATAGCACCAAGGCCAAAGATACCAATTCCATTAAACTACCTCAGCAAAGGAGGATCCATGTCATTCTGGATTGGCCAGAAGTTCCCTAGAATTGCTCTATGTTTCATTTTTGGACTTGGAAATAAAACAACTGGATTTATCACCTGTGAAGTCCAGCTTTCTATTAATGGTCAGAGAGCATCTAGTAGAGAACAGCACTTCCTTTCAGTTTCCGGTGATCTTGCATGGCTGTATCATCAAGAAGATTTGATGGATTTAAATACACATTTACTGCAAGAACAGAATTATGTGGAAGTTTCTTGTGAAATTATAGATGCGAGTAGAGCTTCAGAAGTGACAATATACTGTTGTGGAGTTCATGAGTATAAGGAAGATGAGGAAGTGGAGAAACCAAAGTTGATATTGTGCAAAAGTTATAATAACAATGAATGTCATTATGGTAATAACTTGGGAACTTATTTCTGCACACTGCCTGAGAATTTTAGGCTTCATGAAATATCAGACGAGCAGGTGCAACAGCTTTCGGCTGCAATCATGCCAGAAATGCTTGAAGGTAATGATTCTATGGCTCAAAAGGGAAAGACTACGAATATTGTGCTGGCTGATACAATACATCAAGGCAAGGAGATTTCTTCATTGAATTTACAGCTACATGATGATAGAACTCAGGATCCGATGCTCTTAGAGTTTCAATTGAACCACATGAATGAGAATCAACTTCTTCATAATGATACATCTGAAAATAAAGAAGTTGGGCCTACAATGGAGGCTCTAGTTTCTCCGACCAAAGCTGGATCAAAAGCCTATGAAAATGATGTTCCGAAGGAGTTTAATGACAATATGGAAGCATTTTATGCTGCCCTCCATGCTGAGACCTATGCTCCTCCATCACCTTTATCATTAAGAGACACTAGAGATGATTCAGAGTTGGCTTATCCTCAAATGAGTGAAGAATCCAAGAAAGCCTTGGAAATCCTGAAAGAACTCCTCTCCAAACAATTTTGTTATCTTCTGGACTCAACATCATCCACATCCATGAAAACTACCTTAGAATATCTTTGCACTTTGTTTGCAGATGATGATGAGGTCTCTCTGAGTTTAAAGTCTCTAATACTACAACTTTCAGCTGAACTTCCCCAGTGGAGTTGGGTCTACACTGATGCAAGCATGAAACTTGAGTCCTCAAGTTCTGGTCTATTAAGGCTAGATACAGTAGAAGAGGGTCTTGTAACCAACAAGAACCAGTTTAGTGAATTTGTGTCTATAGAAAAAGAGCTGTGCAGCCAGTTGGCTGATTTGGAACAGAGAAAGAAAGAGCTAGAAGAGAAAATTAATGCCATTAAAGCAAACATCTCCATGTCTGCAGTGGCTAGGGACTCTGCTCTTAGAAAGAAAAGTGAAACCTATGTGGAAGGAAGAGTGTTGAAAGCTCAAAGAGATGAGTTGAGGAAGCGAAAGCCGACCTTAATAGCAGAGAAAGAATCAGCAAAAGCTATCAAAGCAAGCATTGAGGATGAGTGGTCAAAGATTAGAGAGAAATTTGATAGAATCTTGAATACTTTTGGTTGTGAAACCTCTAAATGGAAGTATGATGTATTCTTGAGCTTCAGAGGGGTTGACACCCGCATGAGCTTCACAAGCCATCTTTATCATGCTCTAGGCCTAAAGGGAGTTAACACTTTCATAGACTACAAGGACCTGAAGAGGGGAGAGAATGTTTTACCTGAACTTTTAAAAGCTATTGAAGTCTCAAGGATTTCAGTAGTCATATTATCTAAAACTTATGCTTCTTCCACATCTTGCTTAGATGAACTCCTGAAGATCCTTGAGTATAAGGATTACAAGGGCCAGCTTGTTTTACCAGTCTTTTATCATGTGAATCCATCTCAAGTAAGGGAACAGAAGGGAATTTTTGAAGAAGATTTAGCCAAACATGAAGACCAATTCAGGGATGATGTGAACAAGGTGAAAAGGTGGAGGGAAGCTCTATGTGAAGTAGCCACTTTGTCTGGGTGGAACCTTGGAGATGGGCAGGAATCTAAGTTTGTACAGAGAATTGTTGAAGAGATATTGAGTAAGCTGAACCGCGCGCACCTTTATATGTCGCTAAACATCCTGTTGGACTGA 4905 0.3978 MTQHMAASSSSSTSSFSNGWVYHVFLSFRGEDTRETFTGNLYSALDQRGINTFIDDEELRIGEEISPSLLNAIEESRIAIIIFSKNYASSTWCLDELVKILECKKHKGQGVCSIFYNVDPSDVRHQRGSYEEAFVMLEEKFKDNKEKVQKWRSALSEAANLSGWHFNRGYEYKFIQRIVDEVSRKLNCIPLNVARHPVGLRARVSDVNSLLELGCYDVRMVGIYGIGGIGKTTIAKAVYNTVCDQFQYASFLANVRENASHRTGLVKLQERLLFEILGDKTIKLGNADRGINIIKDRLCRKRVLLVIDNVDDVDQLEALAGGFDWFGPGSRIIITTRDKHLLTAHQVDLTYEVKKLNHVEALQLFSWNAFKRSEPDVSYLEISNRAVCYAEGLPLALTILGSDLCGRSIHQWESALDKYKRTPNRKVQDILRISFDGLEENEKEIFLYIACFFKGEIMEYAVKALRACNLHPAIGIAVLVDKSLITMDEIYVLSMHDLIQDMGKEIVRQESPLDPGKRSRLWYYEDVLQVLTEGTGTDKIQGIMLNLPEKQEVQLESQVLKKMKNLRMLIVRNAEFFGGLVDLPSNLRLLDWEEYPSPSFPSEILPEKIVMLELRRGHLTLDMPFKKYANLTSMNFSSCELLTKIPDVSGIPNLEQLILEDCKGLLEIHESLGSLDKLVYLGVERCTELKNLPSNLKLPSLGCIVLNGCTQLEKFPNLLGKMENLKMIEAEETAIQELPSNVVNFISLEVLTLKRCSNLKELPRTIDMLPNLQLLDISGCPQLQLFPEKISCFSTQNYSTMLPESDESSSNVVSPGIQSSYRFPLMENLDLSDCNLSDGDLHNLSCFSHLISLDISRNHFVALPECFNGLGSLEELYMANCRNFRQISGIPPNLELIDATSCTLLNSQSLNLLLSQGFHKESKFEVIAPRPKIPIPLNYLSKGGSMSFWIGQKFPRIALCFIFGLGNKTTGFITCEVQLSINGQRASSREQHFLSVSGDLAWLYHQEDLMDLNTHLLQEQNYVEVSCEIIDASRASEVTIYCCGVHEYKEDEEVEKPKLILCKSYNNNECHYGNNLGTYFCTLPENFRLHEISDEQVQQLSAAIMPEMLEGNDSMAQKGKTTNIVLADTIHQGKEISSLNLQLHDDRTQDPMLLEFQLNHMNENQLLHNDTSENKEVGPTMEALVSPTKAGSKAYENDVPKEFNDNMEAFYAALHAETYAPPSPLSLRDTRDDSELAYPQMSEESKKALEILKELLSKQFCYLLDSTSSTSMKTTLEYLCTLFADDDEVSLSLKSLILQLSAELPQWSWVYTDASMKLESSSSGLLRLDTVEEGLVTNKNQFSEFVSIEKELCSQLADLEQRKKELEEKINAIKANISMSAVARDSALRKKSETYVEGRVLKAQRDELRKRKPTLIAEKESAKAIKASIEDEWSKIREKFDRILNTFGCETSKWKYDVFLSFRGVDTRMSFTSHLYHALGLKGVNTFIDYKDLKRGENVLPELLKAIEVSRISVVILSKTYASSTSCLDELLKILEYKDYKGQLVLPVFYHVNPSQVREQKGIFEEDLAKHEDQFRDDVNKVKRWREALCEVATLSGWNLGDGQESKFVQRIVEEILSKLNRAHLYMSLNILLD* 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2365 1634 Pfam TIR domain 22 188 IPR000157 GO:0007165
Lja2g2365 1634 Pfam TIR domain 1455 1622 IPR000157 GO:0007165
Lja2g2365 1634 Gene3D Ribonuclease Inhibitor 714 917 IPR032675 -
Lja2g2365 1634 SMART till_3 1455 1595 IPR000157 GO:0007165
Lja2g2365 1634 SMART till_3 21 161 IPR000157 GO:0007165
Lja2g2365 1634 SUPERFAMILY L domain-like 495 914 - -
Lja2g2365 1634 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Lja2g2365 1634 Gene3D - 355 439 IPR042197 -
Lja2g2365 1634 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Lja2g2365 1634 Gene3D Ribonuclease Inhibitor 539 713 IPR032675 -
Lja2g2365 1634 ProSiteProfiles TIR domain profile. 1454 1620 IPR000157 GO:0007165
Lja2g2365 1634 PRINTS Disease resistance protein signature 297 311 - -
Lja2g2365 1634 PRINTS Disease resistance protein signature 767 783 - -
Lja2g2365 1634 PRINTS Disease resistance protein signature 390 404 - -
Lja2g2365 1634 PRINTS Disease resistance protein signature 220 235 - -
Lja2g2365 1634 Gene3D - 16 191 IPR035897 -
Lja2g2365 1634 Gene3D - 1450 1628 IPR035897 -
Lja2g2365 1634 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1290 1423 - -
Lja2g2365 1634 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1454 1619 - -
Lja2g2365 1634 Pfam NB-ARC domain 210 424 IPR002182 GO:0043531
Lja2g2365 1634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1290 1423 IPR044974 GO:0006952
Lja2g2365 1634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1454 1619 IPR044974 GO:0006952
Lja2g2365 1634 SUPERFAMILY Toll/Interleukin receptor TIR domain 1450 1598 IPR035897 -
Lja2g2365 1634 Coils Coil 1349 1376 - -
Lja2g2365 1634 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 22 984 - -
Lja2g2365 1634 Gene3D - 192 351 IPR027417 -
Lja2g2365 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Lja2g2365 1634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 984 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2365 Lja-Chr2 28590696 28609347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2365 16 788 WRKY Transcription Factor Family AT4G12020 32.497 2.41e-97 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2365 - - lja:Lj0g3v0340619.1 2374.36