Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2338 ATGACTTGTGATCCTTCCACCTGCATCAACCATCTGTTGACTCTTATATTTGATTTGTTACTTCTGATCATGATATCACTGGTTATGATCCACAAGTCTTTGTCAGGACCAGTTCGGCGGGTGCAAAGGTTATCAAAGTTGCAGCTAGTTTCTGTCATAACCAATGGCTCTCTTGGGATGTTGCATTTGAGCATAGGCATTTGGGTTTTTGAAGAGCAGTTAAGGAAAACACATAGTGTTCTCCCTCTAAATTGGTGGTTGCTAGAGTTCTTTCAGGGATTCACATGGATGTTAGTCGGCTTAACTCTAAGTCTTGAGCTAAAACAATTTCCAAGAACATGGTTGTGGGTGTTTTCTACTCTTTTATTCTTTTTTTCTGGCATTTTCTGTGCTTTATCCATATCTTATGCATTTAGCAGCAGAGAATTGAACCTCAAGGAAGCTTTAGATGTTGTGTCATTTCCAGGAGCAGCTTTACTCCTCTTGTGCACATACAAATCATGCAAATGTGACGGAGAAGTTGGTGAAAGACTTTATGCCCCTTTAAATAGGAACCAATTCAATGAAGTTGATCCTGTTAGCTATGAAAATGTGACCCCATTTGCCAAAGCTGGATTCTTTAGTAGAATATCATTTTGGTGGTTGAATCTGTTAATAAAAAGGGGTCAGGAGAGAACACTTGAGGATGAGGATATGCCAAAGTTACGGGAGTCCGAACGAGCGGAAAGTTGCTATTTCTTGTTTGTAGATCAATTGGACAGACAGAAGCTATCTGTTTTATGGACAATAATTTTATGCCACCAGAGAGATATTTTGATATCAGGTTTCTGTGCTCTGCTCAAGGTACTCTCTTTGTCTTCTTGTCCTATAATTTTGAATGCCTTTGTATTAGTTTCTGAGGATAATGGAAGTTTCAAATATGAAGGTTATGTATTGGCCATAGCACTTTTCTTTATAAAGATCATAGAATCCCTATCACAAAGGCAATGGTACTTTCGTACTAGACTTGTTGGTATGAAGGTTAAATCACTACTTACTGCAGCAATTTATAAAAAACAACTGAGGTTATCCAATGCTGCTAGATTGGTTCACTCTGGTGGTGAGATAATGAGTTATGTGACTGTAGATGCATACAGAATTGGAGAATTTCCATTTTGGTTTCACCAGACTTGGACAACGATCCTCCAACTGTGTATAGCAGTGGTAATTCTAATTCGCGCTGTTGGATTGGCAACAATTGCCTCATTAGTGGTGATACTTGTCGCTGTTCTTTTCAATGCTCCAATAGCGAAGTTACAGCATAAGTATCTGAGCAAACTGTTAGTGGCACAAGATGAGAGATTAAAGGCTAGTTCGGAGGCTCTAGTAAATGTCAAAGTGTTGAAGTTTTATGCATGGGAAATCCATTTTAAAAATGCTATCGAAAGCTTAAGAAAGGTGGAACTCAAATGGTTATCTTCAGTCCTGTTACAAAAAGCATACAATGTCATTATCTTTTGGTCTTCCCCCATGTTTGTCTCTGCTGCTACCTTTGGGGCATGTTATTTGTTGAAAGTTCCTTTACATGCAAATAATCTTTTCACTTTTGTGGCAACTTTACGTCTTGTGCAAAATCCAATTTCAATCATCCCGGACCTTATTGGAGTTGTTATTCAAGCAAATATTGCATTTACCCGGATCGTAAAATTCCTTGAAGCACCTGAGCTGCCGGGGGAAAATGTCAGAAATTTGTGCTTTGATGAGAAGCTCAAGGGCACAATTTTAATTAACTCTGCGGACTTTTCATGGGAAGGTAATAATGCATCAAAGCCAGCATTAAGAAACATAAATCTAAAGGTTATTCCTGGGCAAAAGATAGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTAGCAGCAATTCTTGGAGAAGTCCCTGTTACTAAAGGAAATATTGAAGTTTATGGGAAGTTTGCTTATGTTTCTCAAACATCATGGATACAAAGAGGAACAATACAGGAAAATATTTTGTTTGGATCAGATTTAGATGCTCAGAGGTATCAAGAAACACTTGATAGGTGTTCACTTGTGAAGGACCTTGAGTTGTTTCCCCATGGTGACCTTACTGAAATAGGTGAGAGAGGAGTTAACCTAAGTGGAGGTCAGAAGCAGCGTATTCAACTGGCCCGTGCTCTTTATCAGAATGCTGATGTATATCTCCTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAACTTGTTCAGTGAATACATATTGGAGGGACTTAAGGGAAAGACAGTCCTACTTGTGACTCATCAAGTTGACTTCCTCCCAGCATTTGATTATGTTTTGTTGATGTCATATGGAAAATCCCTACAAGCTGCCCCTTATCACCATCTATTGAGCTCAAACCAAGAATTTCAGGACCTAGTCAATGCTCACAAAGAGACTGCTGGTTCTGACCAGCCTGTAGATGTTACTTCTTCCCATGAACATTCAAATTCGGATAGAGAGGTTACACAATCCTTCAAACAGAAGCAGTTTAAAGCAATGAATGGTGATCAGCTAATTAAGAAAGAAGAGAGAGAAAGAGGAGACACAGGGTTCAAGCCTTATTTACAGTATCTGAATCAGAGCAGAGGATACATGTACTTCTCTGCGAGTGCTCTTTCTTTCCTTATGTTTTTGACTTGCCAGATAATTCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCATGTCAGCACGTTGCAATTGATTCTAGTTTACTTGATGATTGGAATTGGTTCCACAATTTTCTTGATGACTAGAATTTTTCTTGCTGTTGCTTTGGGTTTTCAATCATCAAAATCATTATTTTCACAGTTAATGAACTCCCTTTTACGTGCACCAATGTCTTTTTATGACTCCACACCTTTGGGAAGGATACTTAGTCGGGTCTCAGTAGATTTGAGCATTTTGGATCTTGATATCCCACTTAGCCTCACTAATGCTGTGGGAGGTTTTATAGGCTATTATGCTGATCTTATAGTTTTAACAGCAATCACTTGGCAAGTCTTGTTTATCTCTATACCAATGGTATATATTGTTATACGCTTACAGAGACACTACTATGCATGTGCAAAAGAATTTATGCGGATGGATGGCACAACAAAATCCTCTGTAGCTAATCATGTAGCTGAAACTGTTGCTGGATCTATGACAATAAGGGCATTTGAGGCAGAAGATCGTTTTTTCAAGAAGAATCTTGATCTAATCGATGCCAATGCAAGTCCTTTCTTCCATAGTTTTTCCTCAAGTGAGTGGTTGATCCAAAGATTAGAAACAGTCTATGCAATTGTTCTTGCCTCCGCGGCACTTTGCATGGTCATGCTTCCACCTGGGACTTTAACCTCTGGATTTATTGGCATGGCTCTATCTTATGGCCTTTCACTAAATTCTTCCTTAGTATATTCAACTCGATGCCAATGCATTTTAGCAAATCACATAGTATCTGTTGAGAGACTAAATCAATATATGCATATACCAACTGAGGCCCAAGAAGTCATAGAAGGAAATCGTCCTCCAGTTAATTGGCCAGTTGCAGGCAAAGTAGAAATACAGGATTTGCAGATACGATACAGGCCTGGCGGGCCACTTGTATTACATGGTATCACATGCAACTTTGAAGGAGGGTGCAAGATTGGTATTGTTGGTAGAACAGGCAGTGGAAAGTCTACTCTTATAAGTGCTTTATTTCGTCTTGTGGAGCCAGCTGGAGGAAAAATTATAGTTGATGGCATAGACATCTCTTGTATTGGCCTTCATGATTTGAGATCAAGCTTTGGAATTATACCTCAGGACCCTACCCTTTTCATTGGAACAGTTAGATATAATTTAGACCCTTTATCTCAACACTCTGATCAAGAAATATGGGAGGTTCTTCGCAAGTGTCAGTTGCAAGATGCTGTCAAGGATAAAGGTGGCTTAGAGTCTTCAGTTGTTGAAGATGGATCAAACTGGAGCACCGGACAAAGGCAGTTATTCTGCTTAGGACGCGCTCTTTTGAGGAAGAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAAAAAACAATCAAGACTGAATTTGCAGATTGTACAGTCATCACTGTAGCCCACAGGATACCAACCGTGATGAATTGCACTATGGTTCTTGCCATCAATGAGGGAAAGCTAGCGGAGTACGATAAACCAATAAGTTGA 4251 0.3947 MTCDPSTCINHLLTLIFDLLLLIMISLVMIHKSLSGPVRRVQRLSKLQLVSVITNGSLGMLHLSIGIWVFEEQLRKTHSVLPLNWWLLEFFQGFTWMLVGLTLSLELKQFPRTWLWVFSTLLFFFSGIFCALSISYAFSSRELNLKEALDVVSFPGAALLLLCTYKSCKCDGEVGERLYAPLNRNQFNEVDPVSYENVTPFAKAGFFSRISFWWLNLLIKRGQERTLEDEDMPKLRESERAESCYFLFVDQLDRQKLSVLWTIILCHQRDILISGFCALLKVLSLSSCPIILNAFVLVSEDNGSFKYEGYVLAIALFFIKIIESLSQRQWYFRTRLVGMKVKSLLTAAIYKKQLRLSNAARLVHSGGEIMSYVTVDAYRIGEFPFWFHQTWTTILQLCIAVVILIRAVGLATIASLVVILVAVLFNAPIAKLQHKYLSKLLVAQDERLKASSEALVNVKVLKFYAWEIHFKNAIESLRKVELKWLSSVLLQKAYNVIIFWSSPMFVSAATFGACYLLKVPLHANNLFTFVATLRLVQNPISIIPDLIGVVIQANIAFTRIVKFLEAPELPGENVRNLCFDEKLKGTILINSADFSWEGNNASKPALRNINLKVIPGQKIAICGEVGSGKSTLLAAILGEVPVTKGNIEVYGKFAYVSQTSWIQRGTIQENILFGSDLDAQRYQETLDRCSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFSEYILEGLKGKTVLLVTHQVDFLPAFDYVLLMSYGKSLQAAPYHHLLSSNQEFQDLVNAHKETAGSDQPVDVTSSHEHSNSDREVTQSFKQKQFKAMNGDQLIKKEERERGDTGFKPYLQYLNQSRGYMYFSASALSFLMFLTCQIIQNSWMAANVDNPHVSTLQLILVYLMIGIGSTIFLMTRIFLAVALGFQSSKSLFSQLMNSLLRAPMSFYDSTPLGRILSRVSVDLSILDLDIPLSLTNAVGGFIGYYADLIVLTAITWQVLFISIPMVYIVIRLQRHYYACAKEFMRMDGTTKSSVANHVAETVAGSMTIRAFEAEDRFFKKNLDLIDANASPFFHSFSSSEWLIQRLETVYAIVLASAALCMVMLPPGTLTSGFIGMALSYGLSLNSSLVYSTRCQCILANHIVSVERLNQYMHIPTEAQEVIEGNRPPVNWPVAGKVEIQDLQIRYRPGGPLVLHGITCNFEGGCKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISCIGLHDLRSSFGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLRKCQLQDAVKDKGGLESSVVEDGSNWSTGQRQLFCLGRALLRKSRILVLDEATASIDNATDLILQKTIKTEFADCTVITVAHRIPTVMNCTMVLAINEGKLAEYDKPIS* 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2338 1416 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 272 552 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2338 1416 CDD ABC_6TM_ABCC_D1 273 560 IPR044746 GO:0140359
Lja2g2338 1416 Pfam ABC transporter 606 740 IPR003439 GO:0005524
Lja2g2338 1416 SUPERFAMILY ABC transporter transmembrane region 256 570 IPR036640 GO:0005524|GO:0016021
Lja2g2338 1416 CDD ABCC_MRP_domain2 1195 1414 - -
Lja2g2338 1416 CDD ABCC_MRP_domain1 587 788 - -
Lja2g2338 1416 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1197 1415 IPR003439 GO:0005524
Lja2g2338 1416 CDD ABC_6TM_ABCC_D2 879 1172 IPR044726 GO:0140359
Lja2g2338 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 811 IPR027417 -
Lja2g2338 1416 Gene3D ABC transporter type 1, transmembrane domain 844 1179 IPR036640 GO:0005524|GO:0016021
Lja2g2338 1416 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 46 1415 - -
Lja2g2338 1416 Pfam ABC transporter 1214 1361 IPR003439 GO:0005524
Lja2g2338 1416 Gene3D ABC transporter type 1, transmembrane domain 253 570 IPR036640 GO:0005524|GO:0016021
Lja2g2338 1416 Gene3D - 1181 1416 IPR027417 -
Lja2g2338 1416 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 589 811 IPR003439 GO:0005524
Lja2g2338 1416 Gene3D - 574 835 IPR027417 -
Lja2g2338 1416 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 46 1415 - -
Lja2g2338 1416 SMART AAA_5 1223 1406 IPR003593 -
Lja2g2338 1416 SMART AAA_5 615 788 IPR003593 -
Lja2g2338 1416 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 897 1160 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2338 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1187 1412 IPR027417 -
Lja2g2338 1416 MobiDBLite consensus disorder prediction 816 841 - -
Lja2g2338 1416 SUPERFAMILY ABC transporter transmembrane region 868 1177 IPR036640 GO:0005524|GO:0016021
Lja2g2338 1416 Pfam ABC transporter transmembrane region 271 539 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2338 1416 Pfam ABC transporter transmembrane region 897 1140 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2338 1416 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2338 Lja-Chr2 28079766 28096394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2338 540 804 Calmodulin-binding Proteins AT2G36910 27.018 2.21e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2338 K05666 - gmx:100787314 2084.69