Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2325 ATGTCTTCTGCCGGCGCCGGTGACCGCGCCGTTACCTCCGGCGAGCCTCGCCGTTATTTCTGCCACCAGTGCGACCGCACCGTCCCTATTTCCCCTTCCTCCGGCGACCTCATCTGTCCCAATTGCAACGGTGGCTTCCTCGAGGAACTCGAAACACCAATCCCCAACCCTAACCCTAACCCTATCCATCCCTTCTTCTCCTTCACCACCGCCTCCCCCGCCGCCGCATCCACCGCTTTCCCCCTCGCCTTCCCCGCCGCTACTCAACCGTTCGATGATCTCTCCGCCTTATTCGGCACCCGCTCTTCCCCGCCTTTCGGCGCTGACACCAACGACGCGTTCAACCCCTTTGCGTTCCTCCAGAACTACGTCCAAACCCTGGCTGCCGGAGGCGCCAACGTCCAGTTCGTGATCGAGAACTCCGGCGACCCTACCGGAGCGTTCCGGATCCCTAGCAACGTGAACCATGGCGATTACTTCTTCGGTCCGGGCCTCGAGGAGCTCATCCAGCAACTTGCGGAGAATGATCCAAATCGCCGTGGGACGCCGCCTGCGTCGAAGTCTGCCGTGGAGGGGCTCCCGGATGTTTCGGTGACGGAGGAGCTTCTGGCGTCAGATTCGGCGCAGTGTGCTGTGTGCAAGGATATCTTCGGCCTCGGCGACACCGCGAAGCAGATGCCTTGCAAGCATATTTATCATGCGGATTGCATCTTGCCTTGGTTGGAAATGCACAACTCTTGCCCGGTTTGCCGGCACGAGTTGCCCACTGATGATCCTGACTACGAGCAGAGGGCAGGCCGCCGTGTGTCGACGGAGACTTCTGGCGGTGGTGGTGGCCGCAGCAGCGGTGATAGTTCACAGAGGAGGGGGTTTAGGGTCTCTTTGCCGTGGCCTTTTAGGCAATCTGGTTCTTCGGCTGCGGAGACAAGCAATGTTGGGAATGCTAACAACAACAGCAATAACAATAGTGGAAATAATAGTGGGCAATCGAATACTGAAAATAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGACTGA 1053 0.5821 MSSAGAGDRAVTSGEPRRYFCHQCDRTVPISPSSGDLICPNCNGGFLEELETPIPNPNPNPIHPFFSFTTASPAAASTAFPLAFPAATQPFDDLSALFGTRSSPPFGADTNDAFNPFAFLQNYVQTLAAGGANVQFVIENSGDPTGAFRIPSNVNHGDYFFGPGLEELIQQLAENDPNRRGTPPASKSAVEGLPDVSVTEELLASDSAQCAVCKDIFGLGDTAKQMPCKHIYHADCILPWLEMHNSCPVCRHELPTDDPDYEQRAGRRVSTETSGGGGGRSSGDSSQRRGFRVSLPWPFRQSGSSAAETSNVGNANNNSNNNSGNNSGQSNTENRGNQNFESETRQEDLD* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2325 350 CDD RING-H2_RNF126_like 209 251 - -
Lja2g2325 350 MobiDBLite consensus disorder prediction 298 339 - -
Lja2g2325 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 295 - -
Lja2g2325 350 SUPERFAMILY RING/U-box 195 258 - -
Lja2g2325 350 MobiDBLite consensus disorder prediction 268 289 - -
Lja2g2325 350 MobiDBLite consensus disorder prediction 257 350 - -
Lja2g2325 350 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Lja2g2325 350 SMART ring_2 210 250 IPR001841 -
Lja2g2325 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 10 295 - -
Lja2g2325 350 Pfam Ring finger domain 209 251 IPR001841 -
Lja2g2325 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 257 IPR013083 -
Lja2g2325 350 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2325 Lja-Chr2 27871103 27878423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2325 151 268 C3H Transcription Factor Family AT5G01980 52.542 1.75e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2325 - K11982 gmx:100818686 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2325 2 27871103 27878423 Lja2g2325 2 27871103 27878423 ECH