Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2324 ATGGCTCTGCTACCATCATCATCATCCTCCTCCTTCACCTATGCATTCACTTACGATGTATTCCTCAGCTTCAGGGGCTCTGATACTCGCTTTGGTTTTACTGGCAATCTCCACAAAACTCTATCAGACAAGGGAATCCACACCTTCATTGATGATAAGGACCTTAAGAGAGGAGATGAAATCACACCCGCACTTATCAAGGCCATTCAAGAGTCGAGGATCGCCATCCCTATCTTCTCTGTGAACTATGCTTCTTCTTCATTTTGCCTGGATGAACTTGTCACCATCATAGAGTGTTTCAAGGCAAAAGGGCGGTTGGTTTTTCCGGTTTTCTATGATGTGGATCCTTCTCATGTCAGACATCAAAGAGGGACTTATGCTGAAGCATTGGACAAGCATGAGAAGAGGTTTAAGGATAGCAAGGAAAAGTTGAAGGACAACATGGAGAGGTTGCAAAAATGGAAGATGGCTCTTAACCAAGCCGCTAATTTGTCAGGCTCTCATTACAAACCCAGAGATGGATCTTATGAACACGAGTTTATCGGAAACATTGTTAAAGAGGTCTTAAGAAAGATTAATCGTGTAGCTTTACATATTGCTGATTACCCCGTTGGACTAGAGTCCCAAGTGGAAGAAGTGCTTTTGCTTATGGATGTTGGGTCTGATGATAAAGTTCACATGGTAGGAATTCATGGAATTGGAGGGATTGGTAAAACGACACTTGCTCTAGCAGTTTACAATTCCATTGCTGACCATTTTGAAGGTTTATGTTTTTTAGAAAATGTTCGAGAAAATTCAAACAAACATGGGTTACCACATCTCCAAAAGATTTTTCTTGTGGATGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCGGCAAAGGAATTTCAATGATACAACGTAGGCTCCAGCAAAAAAGGGTTCTTCTGATTCTAGATGATGTTAACAAGATGGAGCAGCTACAGGGCATTATTGGAAGGCCTGATTGGTTTGGTCGTGGTAGTAGAGTCATCATCACGACTCGGGATAAACACTTGCTAGCATTTCACGGGGTTCAAAGCACATATGAAGTGGAAACATTGAACAATAATGATGCTTTTAGATTGCTCAAATGGAAAGCTTTTAAAGATGACAAGGTTAGACCAAATTATGAAGACATGTTAAATCGTGCAGTGGCTTATGCTTCCGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTATGGAAAAAATATACATGAATGGAAATCTGCATTAGAACAATATGAAAAGGTTCCAATTAGAAAGATCCAACAGGTACTTGAAGTGAGTTTTGTTGCTTTAGAGAAACAAGAGCAAAGTGTTTTCTTAGACGTCGCTTGTTGCTTCAAAGGATATAACTTAAAAGAGGTCGAAAATATACTCTCTGCCCATCATAACCAATGCATTAAATATCAAATTGTTGTGCTGGTTGATAAGTCTCTCATAAAGATTACTGATTCGGGTGATGTGACACTACACGACTTGATTGAGGATATGGGTAAAGAAATTGTGCGACAAGAATCACCACAAGAGCCTGGAAACCGCAGTAGGTTATGGTTTCATGAAGACATATTTGAAGTTTTGGAACAAAATACGGGAACAAGCAAAATTGAAATGATGCATCTAGATTACCTGTCATTTGAAGAAGTGAATTGGGATGGAGAGGCTTTCAAAGAGATGAAAAAACTGAAAACACTTGTCATTAGAAAAACTCATTTTTCTAAAGGTCCAGAGCATCTTCCAAATAGTTTAAGAGTACTAGAGTGGTGGAAATACCCTTCACAACATTTACCAAGTGATTTCCGTCCAAAGAAACTTTCCATATGCAAATTACCCGAGAGTAGGTTTATGTCATTGGAGTTGCTAAGTTCATCAAAGAAGTTCGTGAGTATGAAAGTCTTAAATCTCAATCGGTGTGGATCATTAACACATATACCTGACGTATCTGGTCTCCCAAATTTAGAAGAGCTTTCATTTAAAGATTGTTCAAAATTAATTACGGTTGACTGTTCGGTTGGGTTGTTGGCCAAACTTAAAAGCTTGAATGCTCGTCATTGCTCCCAGCTTAGGAGTTTTCCTCCCCTCAAGCTGCCCTCTCTTGAAGAACTCGGGCTTGAAGGTTGTTCAAGTCTTGAGAGTTTTCCAGAAATATTAGAAGAGATGGAAAATATAGAGGAGCTTGATTTGAGTGGCACTAAAATAAGTAAATATCCACATTCATTTGGAAATCTGACTCGACTTCGATTAATGTGGGTTTATCACTTGCTGCCACCAAGGAGCTTAGACACGATGCCACAACTATTATGGCACACAATCAATCAGCGGCGGATGTATTATGAGGATAGCGAGAGTGAGAGTGAAGAAGAAGTGATGGATGGCGGAGCTGTGGAATTAGTTCCCACGTTCTTGAATGAAAAAGAGAGTTCCATGCTTTTGCCTTCAAAACTAGAATGTCTTACTCTCGAACAGTGGCCGATGTATTATGCGGATAGCGAGAGTGAGAGTGAAGAAGAAGTGATGGATGGCGGAGCTGTGGAATTAGTTCCCACGTTCTTGAATGAAAAAGAGAGTTCCATGCTTTTTCCTTCAAAACTAGAATGTCTTACTCTCAGAGGCATACTTAACCTATCAGATGAATATTTAGTATTAGTTCCCTCCTTGTTTCCTAACTTGCAAGAATTAGAGCTAATGGATTGTCCATCAATCACAGTTGTACCTGAATGCATCAAAGAATGTCGCTTTTTACGGAGGCTTATTTATAAATTATACTTGTACTTCTTACCTTCATGTCATAATGATTGGAGCCTTCCCCACAATGTATAA 2853 0.3957 MALLPSSSSSSFTYAFTYDVFLSFRGSDTRFGFTGNLHKTLSDKGIHTFIDDKDLKRGDEITPALIKAIQESRIAIPIFSVNYASSSFCLDELVTIIECFKAKGRLVFPVFYDVDPSHVRHQRGTYAEALDKHEKRFKDSKEKLKDNMERLQKWKMALNQAANLSGSHYKPRDGSYEHEFIGNIVKEVLRKINRVALHIADYPVGLESQVEEVLLLMDVGSDDKVHMVGIHGIGGIGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLPHLQKIFLVDVLGEKEIEITSVGKGISMIQRRLQQKRVLLILDDVNKMEQLQGIIGRPDWFGRGSRVIITTRDKHLLAFHGVQSTYEVETLNNNDAFRLLKWKAFKDDKVRPNYEDMLNRAVAYASGLPLALEVIGSNLYGKNIHEWKSALEQYEKVPIRKIQQVLEVSFVALEKQEQSVFLDVACCFKGYNLKEVENILSAHHNQCIKYQIVVLVDKSLIKITDSGDVTLHDLIEDMGKEIVRQESPQEPGNRSRLWFHEDIFEVLEQNTGTSKIEMMHLDYLSFEEVNWDGEAFKEMKKLKTLVIRKTHFSKGPEHLPNSLRVLEWWKYPSQHLPSDFRPKKLSICKLPESRFMSLELLSSSKKFVSMKVLNLNRCGSLTHIPDVSGLPNLEELSFKDCSKLITVDCSVGLLAKLKSLNARHCSQLRSFPPLKLPSLEELGLEGCSSLESFPEILEEMENIEELDLSGTKISKYPHSFGNLTRLRLMWVYHLLPPRSLDTMPQLLWHTINQRRMYYEDSESESEEEVMDGGAVELVPTFLNEKESSMLLPSKLECLTLEQWPMYYADSESESEEEVMDGGAVELVPTFLNEKESSMLFPSKLECLTLRGILNLSDEYLVLVPSLFPNLQELELMDCPSITVVPECIKECRFLRRLIYKLYLYFLPSCHNDWSLPHNV* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2324 950 Gene3D - 361 445 IPR042197 -
Lja2g2324 950 SUPERFAMILY "Winged helix" DNA-binding domain 432 539 IPR036390 -
Lja2g2324 950 Gene3D - 17 192 IPR035897 -
Lja2g2324 950 Gene3D Ribonuclease Inhibitor 530 677 IPR032675 -
Lja2g2324 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 454 IPR027417 -
Lja2g2324 950 SMART till_3 17 164 IPR000157 GO:0007165
Lja2g2324 950 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 930 IPR044974 GO:0006952
Lja2g2324 950 Pfam TIR domain 18 193 IPR000157 GO:0007165
Lja2g2324 950 PRINTS Disease resistance protein signature 303 317 - -
Lja2g2324 950 PRINTS Disease resistance protein signature 396 410 - -
Lja2g2324 950 PRINTS Disease resistance protein signature 705 721 - -
Lja2g2324 950 PRINTS Disease resistance protein signature 227 242 - -
Lja2g2324 950 ProSiteProfiles TIR domain profile. 16 192 IPR000157 GO:0007165
Lja2g2324 950 PANTHER ARCHAEAL ATPASE 28 930 - -
Lja2g2324 950 Gene3D - 193 355 IPR027417 -
Lja2g2324 950 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 166 IPR035897 -
Lja2g2324 950 SMART AAA_5 224 363 IPR003593 -
Lja2g2324 950 Gene3D Ribonuclease Inhibitor 678 942 IPR032675 -
Lja2g2324 950 Pfam NB-ARC domain 209 431 IPR002182 GO:0043531
Lja2g2324 950 Coils Coil 130 161 - -
Lja2g2324 950 SUPERFAMILY L domain-like 514 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2324 Lja-Chr2 27842972 27847680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2324 12 779 WRKY Transcription Factor Family AT4G12020 30.051 5.48e-77 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2324 - - lja:Lj0g3v0247409.1 1537.32