Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2323 ATGGCTTTCCTACCATCATCATCCTCCTCTTCCATCACCTATGCATTCACCTACGATGTGTTCATCAGCTTCAGGGGTTCTGATACCCGCTATGACTTTACCGGCAATCTCTACAAAGCTCTCTATGGTAAGGGAATTCACACTTTTATTGATGACAAGGAGCTTCACAAAGGGGACGAAATCACACCATCACTTGAGAAGGCCATTCAAAAGTCCAGGATTTTCATCATTGTCCTCTCTAAGGACTATGCATCTTCCTCGTTTTGCTTAGATGAACTTTCCAAGATTCTTGACTGCTCTCAAGAAGAGGGTCGTCTCGTTTGGCCAGTATTTTATGATGTGGATCCTTCTGATGTGCGGAAGCTGAAAGGGACATTCGGAGAAGCAATGATCCTGCATACGGAGAGGTTCAAAGATAACAAGGACAAGTTGCAAAAATGGACGACAGCTCTACAACAAGTGGCTAATTTGTCAGGCTGGCATTTCAAACATGGAGATGGATATGAACACGAGTTTATCGGAAAGATTGTTAATGAAGTTTCAAGAAAGATTAATCGTGTTGCTTTACCTCCTGCTGATTACCCGGTTGGACTAGAGTCCCAAGTGCGGCAAGTAGTTTCACTTTTGGATGTTGGGTCTATTGATAGAGTTCACATGGTAGGGATCCATGGAACAGGTGGAATTGGTAAAACAACACTAGCTCTTGCAGTTTACAATTCCATTGCTGACCATTTTGAAGGTTTATGTTTTTTGGAGAATGTTAGAGAAAATTCAAACAAACATGGGTTACTACATCTCCAAAAGACCCTTCTTTTGGCTTTCCTTGGAGAGAAGGAAATTGAGATAACAAGTGTCAAGCATGGAAGTTCAATAATACAACATCGGCTCCAACAAAAAAAGGTTCTTTTGATTCTAGATGATGTTGACAAGAAGGAGCAATTAAATGATATTATTGGAAGACCTAATTGGGTTGGTCCTGGTAGTAGAGTCATCATCACAACTCGAAACCAACAATTGCTAGCGTGCCATGGGGTTGAAATAACATACAAAGTGGAAGAGTTGACGAAGGAAGATGCTACCAAATTGTTCACATGGAATGCTTTTAAAAACCAGGAAGTTAATTCAAGTTATGAAGACTTATTGAACCAAGCATTGAGTTGTGCTTCCGGCCTTCCGTTAGCCTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAAACAAGGGAAGAATGGGAATCTGCATTGGAACAATATAGAAGGATTCCACCTAAAGAGATCCAAAAAATACTTCAAGTGAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAATATTTTCCTAGACATTGCTTGTTGCTTCAAAGGATATGAATTGGGAGTGGTCAAGGACATACTTTGTGCTCATTATGGTTTCTGCATAGCAAATCACATTAAGGTGTTGGTTCAAAAGTCTCTCATAACGATTACTCCGTATTTGAGTGAATTGACACTACACGACTTGATTGAGGATATGGGTAAAGAAATTGTGCGACAAGAATCACCACAAGAGCCTGGAAACCGTAGTAGGTTATGGTTTCATGAAGACATATTTCAAGTTTTGGAACAAAATACGGAAACAAGCAGAATTGAAATGATACATCTAGATTACCCATCATCTGAAAAAGTGGGTTGGGATGGAGAGGCTTTCAAGAAGATGAAAAAACTCAAAACACTTATTATTAGAAAAAGTCATTTTTCTAATAGTTCAAAGCATCTTCCAAATAGTATAAGAGTACTAGTGTGGTGGAAATATCCTTTAGCAGATTTACCAAGTGATTTTCATCCCAAAAAACTTTCCATATGCAAATTACCTGAATGCATCAAAGAATGTCGCTTTTTACGGAAGCTTACCTTGTTTGGATGCCAACAACTTAGAGAAATTTGTGAAGGGATTTTGCCAAGATTAACCTACTTACTTGTAATCAAATGTCCATCCTTGAGTTCCAGTTGTAGAAGCATGTTGATGAGGCAGGATCTGCATGAGGATGCAAAAATTGATCTTGGATTGCGAAACTTAGAAGGAGAAACGATTCCAGAGAGGTTTGAGCACCAGAACAGGGGTCGATCTCCGTCACTTTCTTTCTGGTTTCGTAACGACTTCCCTGACATCTTACTATGTATTGCTTCTCCACCTGAGCCAAATATGCCTGACCATGATTATTCATTCAGAGTAAATTCCTTCAACAATGGCACTTTAGTTGAAAATTTCAGAGTAAATTGGGGTTATACTCTTCTTCAGAGGCTAATCAAAGACTACTTTGATACACATATGAGCGAAAGATGCAGGATATCAAAAAATGAGTGGAATCATGTGGAGTTTAGGACTGAAAGGGGCTTTGATTTTGGAATTGGAATCCATGTATTGAAAGAGCAAAACATGCAGGATATCCGATTCACGAATCCTTTAGACTTGAACTTGGCACCACTTGAAGAGGATGAAGTAAGCAAAAACTTGACTTCACTTCATGGCAAAATCTAA 2511 0.3919 MAFLPSSSSSSITYAFTYDVFISFRGSDTRYDFTGNLYKALYGKGIHTFIDDKELHKGDEITPSLEKAIQKSRIFIIVLSKDYASSSFCLDELSKILDCSQEEGRLVWPVFYDVDPSDVRKLKGTFGEAMILHTERFKDNKDKLQKWTTALQQVANLSGWHFKHGDGYEHEFIGKIVNEVSRKINRVALPPADYPVGLESQVRQVVSLLDVGSIDRVHMVGIHGTGGIGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLLHLQKTLLLAFLGEKEIEITSVKHGSSIIQHRLQQKKVLLILDDVDKKEQLNDIIGRPNWVGPGSRVIITTRNQQLLACHGVEITYKVEELTKEDATKLFTWNAFKNQEVNSSYEDLLNQALSCASGLPLALEVIGSNLFGKTREEWESALEQYRRIPPKEIQKILQVSFDALEEEEKNIFLDIACCFKGYELGVVKDILCAHYGFCIANHIKVLVQKSLITITPYLSELTLHDLIEDMGKEIVRQESPQEPGNRSRLWFHEDIFQVLEQNTETSRIEMIHLDYPSSEKVGWDGEAFKKMKKLKTLIIRKSHFSNSSKHLPNSIRVLVWWKYPLADLPSDFHPKKLSICKLPECIKECRFLRKLTLFGCQQLREICEGILPRLTYLLVIKCPSLSSSCRSMLMRQDLHEDAKIDLGLRNLEGETIPERFEHQNRGRSPSLSFWFRNDFPDILLCIASPPEPNMPDHDYSFRVNSFNNGTLVENFRVNWGYTLLQRLIKDYFDTHMSERCRISKNEWNHVEFRTERGFDFGIGIHVLKEQNMQDIRFTNPLDLNLAPLEEDEVSKNLTSLHGKI* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2323 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 622 694 IPR044974 GO:0006952
Lja2g2323 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 617 IPR044974 GO:0006952
Lja2g2323 836 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Lja2g2323 836 SUPERFAMILY L domain-like 507 659 - -
Lja2g2323 836 Pfam NB-ARC domain 199 433 IPR002182 GO:0043531
Lja2g2323 836 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Lja2g2323 836 SUPERFAMILY "Winged helix" DNA-binding domain 423 532 IPR036390 -
Lja2g2323 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 447 IPR027417 -
Lja2g2323 836 Gene3D - 353 437 IPR042197 -
Lja2g2323 836 Gene3D - 181 347 IPR027417 -
Lja2g2323 836 Gene3D - 15 180 IPR035897 -
Lja2g2323 836 PRINTS Disease resistance protein signature 219 234 - -
Lja2g2323 836 PRINTS Disease resistance protein signature 561 577 - -
Lja2g2323 836 PRINTS Disease resistance protein signature 388 402 - -
Lja2g2323 836 PRINTS Disease resistance protein signature 295 309 - -
Lja2g2323 836 Pfam TIR domain 18 185 IPR000157 GO:0007165
Lja2g2323 836 SMART till_3 17 157 IPR000157 GO:0007165
Lja2g2323 836 Gene3D Ribonuclease Inhibitor 522 694 IPR032675 -
Lja2g2323 836 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 622 694 - -
Lja2g2323 836 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 20 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2323 Lja-Chr2 27820402 27824253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2323 18 647 WRKY Transcription Factor Family AT4G12020 30.677 5.94e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2323 - - lja:Lj0g3v0327379.2 867.455