Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2317 ATGAACGGGAAAGCTTCCGTTTCGAAAGAGCTTCATGCTAAGCACGCTAAGATTTTAGAGGGACTTCTTAAGCTGCCTGACAACAGGGAATGTGCAGATTGTAGGAACAAGGCACCGCGATGGGCAAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGAAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAGTTGATAGGTAATGCGAGGTCAAATAAGCACTGGGAGGCAAAACTGCCACCAAACTTTGACAGCAATGGATATGGAATCGAGAAGTTTATAAATGCCAAGTACGTGGAGAAAAGATGGGCTTCGCAAGGTGAGTTTCTAGCAGCATTAAAGTCAGCTGACCCAACCTTTAACTTGAATGAGTCCCCAGAAGTTGGGGCCAAGAGTGGTATTCAAAAAAATAGGAGATTGTCCCTTGATGAAAGCATTCTTGTTGACCATATGGCGCGAATTCGGCCTCCTGTAGCTAAACCTCTAGAGGGGTCCTTAGATATACATAAGAAGATTTCACCACCATTGAAGAGGCCATCTGCATCAGTTGATTATGGTAACCGTATTGAAAAGAGCAATGGTACTGTTGATCTTTTTGGCTTGCTTTCCATCCATGATGATAAGCAGGGTTTCTCAACTGCACCTCCTCCTAGTTGGACAACATTTGATTGA 735 0.4367 MNGKASVSKELHAKHAKILEGLLKLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLIGNARSNKHWEAKLPPNFDSNGYGIEKFINAKYVEKRWASQGEFLAALKSADPTFNLNESPEVGAKSGIQKNRRLSLDESILVDHMARIRPPVAKPLEGSLDIHKKISPPLKRPSASVDYGNRIEKSNGTVDLFGLLSIHDDKQGFSTAPPPSWTTFD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2317 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 244 - -
Lja2g2317 244 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 124 IPR001164 GO:0005096
Lja2g2317 244 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Lja2g2317 244 SMART arf_gap_3 16 129 IPR001164 GO:0005096
Lja2g2317 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Lja2g2317 244 CDD ArfGap 19 119 - -
Lja2g2317 244 Coils Coil 244 244 - -
Lja2g2317 244 SUPERFAMILY ArfGap/RecO-like zinc finger 16 125 IPR037278 -
Lja2g2317 244 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Lja2g2317 244 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lja2g2317 244 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lja2g2317 244 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2317 Lja-Chr2 27749591 27753713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2317 19 119 C2H2 Transcription Factor Family AT4G05330 50.467 2.95e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2317 K12486 - gmx:100802691 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2317 2 27749591 27753713 Lja2g2317 2 27749591 27753713 ECH