Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2305 ATGGTTAGGAAGAGGAGAACTGATGGACCTAGTGGGGGTGAAGGTTCTGAGGGCCAACACTCTCATTCTACTGAGAGGAGTGCTCCGCCTCCTCAACAGGCTGCTGCTGCACCGGGAGGAGGAGGACCGGGACCCCAAGGGGGTAGAGGTTATGGTGGTCCACCACAAGGTGGACGTGGCGGCGGCTATGGTGGTGGTGGTGGGCCGGGTTATGGTGGTGGGGGGCGCGGTGGCCATGGGGTGCCACAACAGCAGTATGGCGGCCCTCCTGAGTATCAAGGTAGGGGGAGGGGAGGCCCTTCTCAGCAAGGAGGGCGCGGTGGATATAGTGGTGGCGGCGGAGGATATGGTGGTGGCGGAGGCCGGGGAGGTGGTGGTATGGGCAGTGGCCGTGGCGTAAGTCCCTCACATGGTGGCCCACCATCTAGGCCACCAGCTCCCGAGCTGCACCAAGCAACCCCAGTTCCATATCAAGCTGGGGTGACTCCTCAGCCTCCACCATATGAGGCGAGTTCATCATCATCTCAGCCTGACGTGTCTGAAGTTGAGAAGCAGATGTCCCAGATGGTAGTGGAAACTGAAACTGTGCCTACTCCTCCTCCTGCAAGTAAATCATCTATGAGATTTCCCCTCCGCCCTGGAAAGGGTAGCTATGGCACCAAGTGTATTGTTAAGGCCAATCATTTCTTTGCGGAGCTGCCTAATAAAGATCTGCATCAGTATGATGTAACTATTACTCCAGAAGTTACTTCTAGAGGTGTGAACCGTGCTGTCATGGAGCAGCTGGTGAGGCTGTACCGAGAGTCTCACCTTGGAAAGAGACTTCCTGCCTATGATGGCCGGAAAAGTCTTTATACTGCAGGTGCACTGCCATTCATTTCAAAGGAGTTCAGAATCACCCTAGTTGATGATGATGAGGGAGCTGGAGCAGCACCAAGGAGGGATAGGGAGTTCAAAGTTGTGATAAAATTGGCTGCACGAGCGGATCTTCACCACCTGGGCCTGTTTTTACAGGGGAGGCAAACAGATGCTCCTCAGGAAGCTCTACAGGTTCTAGACATTGTTCTGCGTGAACTCCCCACTACCAGGTATTGTCCAGTGGGGAGGTCATTCTATTCACCTGATCTTGGTAGAAGGCAGCCCTTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTATCAGAGCATTCGTCCCACACAAATGGGACTGTCCCTGAACATTGACATGTCATCAACGGCATTTATTGAGCCTTTGCCAGTCATAGAATTTGTGAATCAATTGCTGAACAGGGATGTCTCCTCCCGTCCATTGTCTGATGCTGACCGCGTCAAGATAAAAAAAGCACTCCGTGGTATCAAAGTTGAAGTAACACATCGTGGTAACATGAGACGGAAGTATCGTATCTCTGGTCTGACCTCACAGGCTACTAGAGAGCTGACGTTCCCTGTGGACGAGAGGGGTACAATGAAGTCTGTTGTTGAATATTTCATGGAGACCTATGGTTTTGTTATTCGACACACTCAGTGGCCTTGTTTGCAAGTGGGCAATACACAGAGACCAAACTATTTACCAATGGAGGTTTGCAAGATAGTAGAAGGCCAACGGTACTCAAAACGCCTCAATGAGAGACAAATTACTGCTTTGCTTAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGCGATATCATGCAGACTGTTCATCACAATGCCTATCATGAGGATCCTTATGCTAAGGAGTTTGGAATCAAAATCAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATTCTTCCTCCACCTTGGCTCAAATACCATGATACTGGTAGAGAAAAGGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAACAAGAAAATGGTCAATGGAGGGACAGTCAACAACTGGTTCTGCATAAACTTCTCAAGGAATGTGCAGGATAGTGTTGCCCGTGGCTTTTGCTATGAACTTGCCCAAATGTGTTATATATCTGGCATGGCATTCAATCCTGAGCCAGTGGTCCCCCCACTAAGTGCTAGGCCTGATCAAGTGGAGAAAGTTCTTAAAACGCGCTATCACGATGCTAAAAATAAGTTGCAAGGGAGAGAACTGGATCTGCTAATTGTTATTCTGCCGGATAACAATGGCTCTCTGTATGGGGACTTGAAAAGGATTTGTGAGACTGACCTTGGGCTTGTCTCCCAGTGCTGCTTAACAAAACATGTTTTCAAAATGAGTAAGCAGTACTTAGCTAATGTAGCTTTGAAGATTAATGTAAAGGTTGGGGGCAGGAACACGGTTCTTGTTGATGCTCTTTCACGGCGCATTCCTTTAGTCAGTGACAGGCCTACAATTATTTTTGGGGCAGATGTCACTCATCCACATCCTGGGGAGGATTCTAGTCCATCAATAGCAGCTGTTGTGGCTTCTCAAGATTATCCTGAAATCACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATCGGCAGGAGCTCATTCAAGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACATTAACTGGTGGAATGATCAAGGAACTTCTTATATCTTTCCGGAGGGCTACAGGACAAAAGCCGCAGCGCATCATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATCCGAAAGGCTTGTGCATCTCTGGAGCCCAACTACCAGCCTCCTGTAACTTTTGTTGTGGTTCAGAAGCGGCACCACACGAGGCTGTTTGCCAGTAACCATCATGACAAGAGTTCTGTTGACCGGAGTGGCAATATTTTGCCTGGCACTGTGGTGGACTCCAAGATCTGCCATCCAACGGAGTTCGATTTTTATCTTTGTTCCCATGCTGGAATCCAGGGCACAAGCCGTCCTGCGCATTACCACGTCCTGTGGGACGAGAACAACTTCACTGCTGATGGTTTACAAAGCCTTACCAACAACCTGTGCTACACCTATGCAAGGTGCACACGATCTGTATCTATTGTGCCTCCAGCATACTATGCCCATCTCGCAGCCTTCCGAGCAAGGTTCTATATGGAGCCTGAAACTTCTGACAGTGGCTCCATGACCAGTGCTGCTGCTGGTCGCGGAATGGGTGGACGAACTACTCGGGCACCTGGTGCCAACGCTGCAGTGAGGCCATTACCTGCACTTAAGGAGAACGTCAAGAGGGTGATGTTCTACTGTTAG 3231 0.4933 MVRKRRTDGPSGGEGSEGQHSHSTERSAPPPQQAAAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGGGGGRGGGGMGSGRGVSPSHGGPPSRPPAPELHQATPVPYQAGVTPQPPPYEASSSSSQPDVSEVEKQMSQMVVETETVPTPPPASKSSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGALPFISKEFRITLVDDDEGAGAAPRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVNQLLNRDVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFMETYGFVIRHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSAAAGRGMGGRTTRAPGANAAVRPLPALKENVKRVMFYC* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2305 1076 CDD PAZ_argonaute_like 417 531 - -
Lja2g2305 1076 Gene3D - 596 769 - -
Lja2g2305 1076 SUPERFAMILY PAZ domain 223 569 IPR036085 GO:0005515
Lja2g2305 1076 Pfam Glycine-rich region of argonaut 87 196 IPR024357 -
Lja2g2305 1076 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 1075 - -
Lja2g2305 1076 Pfam Argonaute linker 2 domain 558 604 IPR032472 -
Lja2g2305 1076 SMART DUF1785_2 365 417 IPR014811 -
Lja2g2305 1076 CDD Piwi_ago-like 576 1026 IPR045246 -
Lja2g2305 1076 MobiDBLite consensus disorder prediction 14 30 - -
Lja2g2305 1076 SMART PAZ_2_a_3 422 554 IPR003100 GO:0005515
Lja2g2305 1076 ProSiteProfiles Piwi domain profile. 706 1027 IPR003165 GO:0003676
Lja2g2305 1076 ProSiteProfiles PAZ domain profile. 418 532 IPR003100 GO:0005515
Lja2g2305 1076 SUPERFAMILY Ribonuclease H-like 692 1027 IPR012337 -
Lja2g2305 1076 Pfam Mid domain of argonaute 615 690 IPR032473 -
Lja2g2305 1076 MobiDBLite consensus disorder prediction 165 202 - -
Lja2g2305 1076 Pfam Argonaute linker 1 domain 366 416 IPR014811 -
Lja2g2305 1076 Gene3D - 775 1076 IPR036397 GO:0003676
Lja2g2305 1076 MobiDBLite consensus disorder prediction 1 211 - -
Lja2g2305 1076 PANTHER PROTEIN ARGONAUTE 1A 110 1075 - -
Lja2g2305 1076 Pfam Piwi domain 707 1026 IPR003165 GO:0003676
Lja2g2305 1076 SMART Piwi_a_2 706 1027 IPR003165 GO:0003676
Lja2g2305 1076 Gene3D paz domain 411 536 - -
Lja2g2305 1076 MobiDBLite consensus disorder prediction 1029 1053 - -
Lja2g2305 1076 Pfam PAZ domain 422 547 IPR003100 GO:0005515
Lja2g2305 1076 Pfam N-terminal domain of argonaute 221 356 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2305 Lja-Chr2 27460193 27466863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2305 91 1076 Eukaryotic Initiation Factors Gene Family AT1G48410 80.382 0.0 1605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2305 K11593 - gmx:100780375 1768.05