Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2304 ATGATGGTTGTGATAGTTGAATACACTTTTACAGAAGCTACAAGGAGTGAAGGAAGGGGGATCAAAATGTCACCGGTTGGATTACCACCTGGTTTTAGGTTCCATCCAACAGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAGCTTGATATCATTCCTGAGGTTGATCTTTACAAATGTGAGCCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTCTTTGGACCCAGGGATAGGAAATACCCAAATGGTTTCAGAACAAATAGAGCAACTAGAGCAGGGTACTGGAAGTCTACTGGGAAAGACAGAAAAGTTTCATGCCAAAGCAGACCAATTGGTATGAAGAAGACTCTGGTATACTACAGAGGTAGAGCTCCTCAAGGAATCAGAACTGACTGGGTAATGCATGAGTATCGCCTCGATGACAAAGACTGCGAGGACACCACCGGATTGCAGGATACTTATGCACTGTGTCGCGTGTTCAAGAAAAATGGAATCTGCTCTGATATTGATCAAGAACAAGGGCAATTTAGCATGTCGCTAATTGAGAGCTCCCAAACCATAATCAATGAGTGCGAAACCATGTCTCCGGACATACCGGGGGCGTCGACGTCTTCGTGCTTAGAAGAGGAAGACAAGGATGATTCATGGATGCAGTTCATTACAGAGGATGCATGGTATTCTTCTAATAATGTATCAATGGCTGGTGGTGAAGAACTCTCAAATGTTACATTTACAAACTAA 789 0.4284 MMVVIVEYTFTEATRSEGRGIKMSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDCEDTTGLQDTYALCRVFKKNGICSDIDQEQGQFSMSLIESSQTIINECETMSPDIPGASTSSCLEEEDKDDSWMQFITEDAWYSSNNVSMAGGEELSNVTFTN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2304 262 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Lja2g2304 262 Gene3D NAC domain 37 181 IPR036093 GO:0003677|GO:0006355
Lja2g2304 262 SUPERFAMILY NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Lja2g2304 262 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 14 262 - -
Lja2g2304 262 ProSiteProfiles NAC domain profile. 28 178 IPR003441 GO:0003677|GO:0006355
Lja2g2304 262 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2304 Lja-Chr2 27385945 27390069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2304 23 253 NAC Transcription Factor Family AT3G17730 73.878 7.30e-131 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g2304 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2304 - - lja:Lj2g3v0621660.1 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2304 2 27385945 27390069 Lja2g2304 2 27385945 27390069 ECH