Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2300 ATGGCTCCTATGGCTAACCTTGTTGTTGGAGTAGCTTCTGTTCCTCTACCTTCACCACCCACAACAAACTCAAGTGCTTCCCCTTTCAACTCCAAGACCCAAACACAAACACTTCATCTCCATTGCTCTCAAACCAACCACAGAAAAACCCCATTCCCTTCTTCCCTCTCATCACCACTCAGAATCCAAGGTAGTTGTTACCTGTTAGCATGTCTTCCTCCTTCTTCTGAATCCTCAAGCTCATCTCCCAGTGCTAAACCCTCTTCTTCTTCTGCTCCTTCAACTAGGCTCTACGTCAGTGGGCTTTCATTTCGTACCACTGAAGAGAGCTTGCGAAATTGTTTCAAGAATTTCGGTCAACTTGTTGATGTCAATCTGGTGATGGATAAACTTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGGTATGCAACGGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGAGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACGGCAAAGATTCCAGCAAAACACTATGCAGAGATGA 567 0.4462 MAPMANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFPSSLSSPLRIQGSCYLLACLPPSSESSSSSPSAKPSSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2300 188 MobiDBLite consensus disorder prediction 14 56 - -
Lja2g2300 188 SUPERFAMILY RNA-binding domain, RBD 83 183 IPR035979 GO:0003676
Lja2g2300 188 PANTHER TRANSFORMER-2-RELATED 19 185 - -
Lja2g2300 188 Gene3D - 74 188 IPR012677 -
Lja2g2300 188 SMART rrm2_1 96 169 IPR003954 GO:0003676
Lja2g2300 188 SMART rrm1_1 96 169 IPR000504 GO:0003723
Lja2g2300 188 MobiDBLite consensus disorder prediction 16 56 - -
Lja2g2300 188 PANTHER RNA-BINDING PROTEIN 1 19 185 - -
Lja2g2300 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Lja2g2300 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2300 Lja-Chr2 27323761 27327632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2300 95 184 Eukaryotic Initiation Factors Gene Family AT4G34110 29.787 2.56e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2300 - K13195 gmx:100305561 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2300 2 27323761 27327632 Lja2g2300 2 27323761 27327632 ECH