Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2299 ATGGAGATGAAGGATCAAGTTGAAGGCCCACGGTCTACCATATATGGCACAGCTAGTAACTTCCCTTCCAATGGTGGAACGCAATCTGATAATGTTGCAAAGTTGCCAGATACACCTGCTGGAAATAGCCTTGCTCCCAAGGCGAGGAAACCCTATACCATTACTAAACAAAGGGAGAAATGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGCGTCAAATTGAAGAGCATATAGGTAGCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGGTTGTGCGAGAATCTGATGGAAGTGCTGAAAGTTCTATTCAGCCTATTGCAATACCTCCTCCTCGGCCGAAGAGGAAGCCTCTCCATCCATATCCCCGGAAATCAGCTGATTCTTTCAAAGGACAGACCGTTCCAAATGAACCAGAAAAATCTCCATCTGCAAACTTGTCAGGTGGAGAGAAAGAGACCCAATCTCCAACCTCTGTGCTATCTGCCTTTGGTTCTGAAGCATTTGGGTCCGCATTTTCTGAGCAGACTAATAGATGTCTTTCACCAAATTCTTGCACAACTGATATCCATTCAATGAGCTTGTCACCTGCTGAAAAGGATAATGATTGCATGACATCGAAACCAGCTGAGGTGGAAGAGAAAGGATCTCTAGCTTCAGTCAATTTAACCACTGGTTTGAACCCACTCATGTGCATGAAGTCCGAGATTGGTGCTGAGGAAACTGAAGGTCTCAAAGAAGATGCTACCAATATGCCACCCATCTCTAGTAGTATCAAGCTTTTTGGAAGAACAGTCTCTATGGTTGGTAATCTAATGTCAATGAAGGTAGATGATGAGAATATCAAGCCAGAAACTATTGAAATGGATGATGTTGAGAATGTAAAGGTTGGCCAAGTAGGGGCATCTGAGCCACTAGATACACAATTATCACTAGGCCTGTCTTGCGGTAAACTGACCAGCATAGAACACCCGAAGGAGAACCTGTGCTCGAGTGAAGATGATCCTGATTCATCTTTACCATCATTGAGTTTGTACCAAGGCCTTTCTGCATTCAACCTCAGGCCATGCAATCATGAAATCTTAAATCCTATGCCTCTTAGGCCGTGTTTGAAGGTAAGAGCAAGAGAGGAGGAAAGTTCTTGCACTGGTTCCAATACTGAATCAGTTGGAAAGAATTCTGATACTGTTGATTCTAAACTTCAAAAGTATCATGAGGATGGAGTAGCACCCCAGAAGTCTGGAAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTGGCTTGGAAGAGAGGGAGGGACAACGAGCTCGGTTGTGCTCATAA 1392 0.4346 MEMKDQVEGPRSTIYGTASNFPSNGGTQSDNVAKLPDTPAGNSLAPKARKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVRESDGSAESSIQPIAIPPPRPKRKPLHPYPRKSADSFKGQTVPNEPEKSPSANLSGGEKETQSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSMSLSPAEKDNDCMTSKPAEVEEKGSLASVNLTTGLNPLMCMKSEIGAEETEGLKEDATNMPPISSSIKLFGRTVSMVGNLMSMKVDDENIKPETIEMDDVENVKVGQVGASEPLDTQLSLGLSCGKLTSIEHPKENLCSSEDDPDSSLPSLSLYQGLSAFNLRPCNHEILNPMPLRPCLKVRAREEESSCTGSNTESVGKNSDTVDSKLQKYHEDGVAPQKSGRGFVPYKRCLAERDANSLIVGLEEREGQRARLCS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2299 463 SUPERFAMILY Homeodomain-like 52 106 IPR009057 -
Lja2g2299 463 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Lja2g2299 463 PANTHER SWI/SNF COMPLEX-RELATED 3 451 - -
Lja2g2299 463 PANTHER PROTEIN REVEILLE 7-RELATED 3 451 - -
Lja2g2299 463 MobiDBLite consensus disorder prediction 12 36 - -
Lja2g2299 463 CDD SANT 60 103 IPR001005 -
Lja2g2299 463 MobiDBLite consensus disorder prediction 144 173 - -
Lja2g2299 463 Gene3D - 60 107 - -
Lja2g2299 463 ProSiteProfiles SANT domain profile. 56 107 IPR017884 -
Lja2g2299 463 Pfam Myb-like DNA-binding domain 58 101 IPR001005 -
Lja2g2299 463 MobiDBLite consensus disorder prediction 109 173 - -
Lja2g2299 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Lja2g2299 463 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 56 105 IPR006447 GO:0003677
Lja2g2299 463 MobiDBLite consensus disorder prediction 1 53 - -
Lja2g2299 463 SMART sant 57 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2299 Lja-Chr2 27314741 27317676 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g2299 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2299 - - lja:Lj2g3v0621850.1 679.863