Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2295 ATGGAGTACGCAAGCGGAGGAAGTGGGTCCCCTGGTGACTACCATGATGGTGGTTCTGATTCCCAGAGGAGAAAGAAGCGCTATCACCGTCACACTGCTAATCAGATTCAGAGGCTTGAATCGCTGTTCAAGGATTGTCCTCATCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGGGAACTAGGCTTGGCCCCTAGGCAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGGGCGGATAACTGCGCGCTCCGGGCTGAGAATGACAAGATTCGCTGTGAGAACATTGCAATCAGGGAAGCGCTGAAAAATGTCATCTGCCCCAATTGTGGTGGTCCTCCTCACAATGATGATTCCTACTTTGATGAGCAAAAGCTGAGGTTGGAGAATGCTCATCTCAAGGAAGAGCTTGACAGAATGTCAAGCATTGCTGCTAAGTACATTGGGCGGCCAATCTCTCAGCTGCCACCAGTTCAGCCTCTTCATATGTCATCTCTGGATTTGTCAATGGGGAGTTATGGTGGGCATGGTTTGGCTGGTGTTGGTGCACCTTCCCTTGATCTTGATCTTCTCCCTGGGAGTTCATCAACCATGGCAAACATGCCTTACCAGCCTGCTGGTTTCTCTGAGATGGAGAAGTCTCTCATGTCGGACATTGCTTCAAGCGCCATGGAAGAAATGATGAGGCTCCTGCAGACTAATGACCCACTGTGGATCAAGTCAAGCGCTGCCGCTGATGGCAAAGATGTGCTCAACTATGATGCCTATGACAGAATGTTCCCCAAGAACAGCAGCCGTTTGAAGAACCCCAATGTTCGTGTTGAAGCTTCTAGGGATTCTGGAGTTGTGATCATGAATGGCTTGACTTTGGTTGACATGTTTATGGATCCGAACAAGTGGATGGAGATATTTCCCACCATTGTGACAGTGGCAAGGACTATGGAAGTTATATCTCCTGGAATGATGGGTACTCATAGTGGCTCTTTGCAATTGATGTATGAAGAGTCGCAAGTGCTTTCTCCACTTGTTCCTACTAGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCTTGTGGGCAATAGTGAATGTTTCATATGATTTTCCTCATGATAACCAATTCACACCTCAATTCCGCTCTCATCGCCTTCCTTCTGGTTGCTTCATCCAAGACATGCCTAATGGCTATTCCAAGGTTACTTGGCTAGAGCATGTGGAGATTGAAGACAAAACTCCAGTTAACAGGCTTTATAGGAATGTTATCTATAGTGGGCTTGCATTTGGAGCTCAAAGGTGGCTCACTACTCTTCAGAGGATGTGTGAAAGGCTTGCTTGTCTAATGGTGTCTGGAAATTTTACCCGTGATCTGGGAGGAGTGATTCCATCTCCTGAGGGGAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTGACCAATTTCTGTGCAAGTGTTAGCGCATCGGCAAGCCACCAATGGACCACACTCTCTGGACTGAATGAGATTGGAGTCAGAGTCACTGTGAGGAAGAGCACAGACCCTGGCCAGCCTAATGGGGTTGTGCTTAGTGCTGCCACTACCATTTGGCTCCCAGTTCCCCCACAAACTGTGTTCAACTTCTTCAAGGATGAAAGGAAAAGATCTCAGTGGGATGTTCTCTCTAATGGTAATGCTGTCCAAGAGGTTGCTCACATAGCAAATGGTTCCCATCCTGGCAACTGCATATCTGTGCTTAGGGCTTTCAACACAAGTCAGAACAACATGCTGATCCTGCAAGAGAGCTGTGTGGACTCCTCAGGCTCCATTGTGGTGTTCTGTCCAGTTGATCTGCCAGCTATCAACATCGCGATGAGCGGCGAGGACCCTTCCTACATTCCATTACTACCATCAGGGTTCACAATTACACCTGATGGAAACACTGATCAAGGAGGTGGAGGAGGAGATGGAGCATCAACCAGCTCAAACACCAACACCAGGTCTGGTGGAGGATCGCTGATCACCGTCGCGTTTCAGATTCTGGTGAGCAGCCTGCCATCTTCGAAGCTGAACATGGATTCGGTGGCGACGGTTAACAGCCTCATTGGTGACACTGTCCAGCACATTAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2160 0.4852 MEYASGGSGSPGDYHDGGSDSQRRKKRYHRHTANQIQRLESLFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPNCGGPPHNDDSYFDEQKLRLENAHLKEELDRMSSIAAKYIGRPISQLPPVQPLHMSSLDLSMGSYGGHGLAGVGAPSLDLDLLPGSSSTMANMPYQPAGFSEMEKSLMSDIASSAMEEMMRLLQTNDPLWIKSSAAADGKDVLNYDAYDRMFPKNSSRLKNPNVRVEASRDSGVVIMNGLTLVDMFMDPNKWMEIFPTIVTVARTMEVISPGMMGTHSGSLQLMYEESQVLSPLVPTREFYFLRYCQQIEQGLWAIVNVSYDFPHDNQFTPQFRSHRLPSGCFIQDMPNGYSKVTWLEHVEIEDKTPVNRLYRNVIYSGLAFGAQRWLTTLQRMCERLACLMVSGNFTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASVSASASHQWTTLSGLNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPVPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCVDSSGSIVVFCPVDLPAINIAMSGEDPSYIPLLPSGFTITPDGNTDQGGGGGDGASTSSNTNTRSGGGSLITVAFQILVSSLPSSKLNMDSVATVNSLIGDTVQHIKAALNCPSS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2295 719 SMART HOX_1 23 86 IPR001356 GO:0003677
Lja2g2295 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 717 IPR042160 -
Lja2g2295 719 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Lja2g2295 719 CDD homeodomain 24 83 IPR001356 GO:0003677
Lja2g2295 719 Coils Coil 130 150 - -
Lja2g2295 719 SUPERFAMILY Bet v1-like 473 711 - -
Lja2g2295 719 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Lja2g2295 719 Gene3D - 224 452 IPR023393 -
Lja2g2295 719 MobiDBLite consensus disorder prediction 644 667 - -
Lja2g2295 719 MobiDBLite consensus disorder prediction 1 31 - -
Lja2g2295 719 Gene3D - 14 96 - -
Lja2g2295 719 CDD START_ArGLABRA2_like 220 451 - -
Lja2g2295 719 ProSiteProfiles START domain profile. 216 455 IPR002913 GO:0008289
Lja2g2295 719 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Lja2g2295 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 717 - -
Lja2g2295 719 Pfam START domain 226 452 IPR002913 GO:0008289
Lja2g2295 719 SUPERFAMILY Bet v1-like 217 453 - -
Lja2g2295 719 SMART START_1 225 452 IPR002913 GO:0008289
Lja2g2295 719 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2295 Lja-Chr2 27186653 27189823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2295 20 719 Homeobox Transcription Factor Family AT1G73360 66.289 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g2295 START 1.7e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2295 K09338 - gmx:100809075 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2295 2 27186653 27189823 Lja2g2295 2 27186653 27189823 ECH