Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2291 ATGGATAATTTTGAAAAAGATGGGGTTCCTGTGCTGTCAGAAACACATGTACAAGTATCTGATAAACTCATCGATTATAATTTCCGGAGGCCTGTATCAAGGACAAAGAATGTAGCAATTTCTATTCCCATGATATCCATGGAGTCACATCAGAATGAAAGTAGTCTTAAGGAACACACTAGCCCATTATGTAGTGAGAGGAAAAATCCCTTGATGCAGATGAGTTATCCGCTATATGGTACTCATGGAACTAGAAATCTTTTGCAGCAGACAATGGTTGTGAAAGAAAACAAAGTATCAGAGAGAAAGACAGAAAAAAATTATACTTTCCACGGCACAGGTGAGCGGCACTGGAATAGTAACAGCCCTGATAAGAAAAATGAACACTTGTGGAAGTCAGGGGAACTGGGAATGTGTGATGATCCTTATTGCACTACTTGTCCCACTGACTTCAAGGCTTCTAGGCGAAGAAACTCAAAAGTTTCCACTGTATTTGATCCCAAGTTCCGCAGTTCTCTTTATGGTGAAGCCAAGGGTTTTGGGAAAAAACTTACGTCTTTTTTCTCGTCATGTATTCCCGGAGTAATGAACCCTCACACTAAAGTGGTACAAAAATGGAACAAATTTTTCGCCATCTTTTGCCTGGTGGCAATTTTTGTGGATCCATTGTTCTTTTTCTTAATCTATGTGCAGCAGGACTATAAATGTATTCTTATCAACTGGAAAATTGCAGAAACACTAATTTTACTCAGAACCATAAATGATTTTGTATACTTCTTGAAAATTCTTCTCCAGTTTAGGTTGGCCTATATTTCTCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATGATCCTAAGAAAATTGTTGTCCATTACTTGAAGGGTTATTTTATTCTTGACTTGTTTGTTGTCTTGCCTCTTCCTCAGATAATGATACTATCCATCTTACCAAGGAACTTGGGGTCATCGGGAGCAAATTATGCTAAGAATCTTTTGCGTGCAGTGATACTTGTGCAGTATATTCCCAGGCTATTTAGGGTTCTGCCTCTGCTAAATGGCCAGTCTCCAACAGGATTCCTATTTGAGTCATCATGGGCAAATTTCATTATAAATCTTCTCATGTATATGCTTGCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTAGGTCTACAAAGGGTTAATCAATGTTTACGAGATGCCTGCAGTAAGTCTAATATTAGTGGATGCATTAAAGTCATTGATTGTGGTAAAGGTCATATTGGATATAGCCAGTCTGGCCCAACACCAGTTGTGTGGAACAACAATGCAGATGCCATTGCTTGTTTGAAGCCCTCTCCTAGTGGATTTGATTATGGGATCTACGTCAATGCAGTACCACTTACTATAGAAACTAATTTGGTGAAAAAATATGTGTACTCTCTTTTTTGGGGATTCCAGCAAATCAGTACCCTAGCTGGTAGCCTAACCCCAAGCTATTTTGTTTGGGAAGTCCTTTTTGCAATGGGCATCATAGGGCTAGGACTCTTGCTTTTTGCACTTCTTATCGGGAACATACAGAATTTTCTTCAAGGTCTTGGACAGAGGAGGCTAGAAATGCTACTAAGAGCCCGCGATGTTGAGCAATGGATGAGGCATCGTCGCATTCCAGAAGATTTAAGAAGGAGAGTACGGCAGGCTGAACGGTATAGTTGGGTGGCAACAAGGGGAGCGAATGAAGAAACACTTCTTGAGAATTTGCCAGAAGATTTACAGATCGACATAAGGCGTCATCTCTTCAAATTTGTTAAGAAAATTCGAATTTTCTCCCTAATGGATGAGCCTATCTTAGATGCCATTTGTGAGAGACTAAGACAGAAGACATACATCAATGGAAGTAGAATCTTGAGCCAGGGTGGTATAGTGGAGAAGATGGTCTTTATTGTGCGCGGAAAATTAGAGAGCATTGGAGAAGATGGAATTCGAGTTCCGTTATCTGAAGGGGATGCTTGTGGTGAAGAACTCCTCACATGGTATCTTGAACATTCTTCTGTAAGCACAGATGGTAAAAAGGTAAGGCTTCCAGGACAAAGGTTGCTTAGTAGCAGAACAGTGAAGTGCCTAACAAATGTGGAGGCTTTTTCACTCCGAGCTACAGATCTTGAAGAAGTCACAACCCTTTTCATGAGAACCTTGCGGAGTCTACGTTTTCAAGGACCTCTAAGGTATGAATCCCCATATTGGAGATCCCTTGCAGCAACTCGAATTCAGGTTGCATGGAGATACAGGAAAAAACGTTTAAGTCTTGCTGATACCTCATAA 2307 0.407 MDNFEKDGVPVLSETHVQVSDKLIDYNFRRPVSRTKNVAISIPMISMESHQNESSLKEHTSPLCSERKNPLMQMSYPLYGTHGTRNLLQQTMVVKENKVSERKTEKNYTFHGTGERHWNSNSPDKKNEHLWKSGELGMCDDPYCTTCPTDFKASRRRNSKVSTVFDPKFRSSLYGEAKGFGKKLTSFFSSCIPGVMNPHTKVVQKWNKFFAIFCLVAIFVDPLFFFLIYVQQDYKCILINWKIAETLILLRTINDFVYFLKILLQFRLAYISPESRVVGAGDLVDDPKKIVVHYLKGYFILDLFVVLPLPQIMILSILPRNLGSSGANYAKNLLRAVILVQYIPRLFRVLPLLNGQSPTGFLFESSWANFIINLLMYMLASHVVGSCWYLLGLQRVNQCLRDACSKSNISGCIKVIDCGKGHIGYSQSGPTPVVWNNNADAIACLKPSPSGFDYGIYVNAVPLTIETNLVKKYVYSLFWGFQQISTLAGSLTPSYFVWEVLFAMGIIGLGLLLFALLIGNIQNFLQGLGQRRLEMLLRARDVEQWMRHRRIPEDLRRRVRQAERYSWVATRGANEETLLENLPEDLQIDIRRHLFKFVKKIRIFSLMDEPILDAICERLRQKTYINGSRILSQGGIVEKMVFIVRGKLESIGEDGIRVPLSEGDACGEELLTWYLEHSSVSTDGKKVRLPGQRLLSSRTVKCLTNVEAFSLRATDLEEVTTLFMRTLRSLRFQGPLRYESPYWRSLAATRIQVAWRYRKKRLSLADTS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2291 768 ProSiteProfiles cAMP/cGMP binding motif profile. 603 671 IPR000595 -
Lja2g2291 768 SMART cnmp_10 603 735 IPR000595 -
Lja2g2291 768 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 766 - -
Lja2g2291 768 CDD CAP_ED 603 733 IPR000595 -
Lja2g2291 768 Gene3D - 206 527 - -
Lja2g2291 768 SUPERFAMILY Voltage-gated potassium channels 198 531 - -
Lja2g2291 768 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 4 766 - -
Lja2g2291 768 Gene3D Helix hairpin bin 532 595 - -
Lja2g2291 768 Gene3D Jelly Rolls 601 725 IPR014710 -
Lja2g2291 768 SUPERFAMILY cAMP-binding domain-like 531 720 IPR018490 -
Lja2g2291 768 Pfam Ion transport protein 207 531 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2291 Lja-Chr2 27065805 27085510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2291 5 681 Ion Channels AT3G17700 56.996 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2291 K05391 - ccaj:109789004 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2291 2 27065805 27085510 Lja2g2291 2 27065805 27085510 ECH