Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2290 ATGCCTCAATTCGACAAAGATGGGGTGCCGGTGCTGTTGGAAACACATGCTCAACAATCTGATGAATTCATGGATTCTAATTTCCGGAGGCTCTCATACAGGACACGGAGTGCATCAATTTCTATTCCGATGGTCCCCATTGAACCATATGAGGGAGGAACTCATCTTGTTGGACATACTGGTCCACTTCGTAGTGTGAGAAAACCACCCTCTGGGCAGATGAGTGGTCCACTATATGCTACCACTGCAGGAGCTGGAAATCATTTTCAGCACAGTATAGCTGTGCCAGGAAAAAAAGCAGTGGAGGGCAAGACACAACAACTTTCAACTTTTGATGGTACAGATGAGAATCTTTGGAACAACAACTATGATAGAAAAAATGAACACTTACTGAGGTCTGGGCAGCTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTATATTAAGGCTTCTCAGAAAGGAAATCCAAAGGTTTCGACTGTGTTTGATTCCAAGTTCCATAATTCTCTTTATGGGGAGGCAAAAGGTTTTGGAAGAAAACTTTTTTCTTTCTGCTCTTCATGTGTTCCTGGAGTTATGAACCCTCACGCTAAAGTTGTACAACAATGGAACAAGTTTCTGGCCATGTTTTGCTTGATGGCGATTTTTGTTGATCCATTATTTTTCTTCTTATTCTATGTGAGGAAGGATTCTAACTGTATTGTTATCGACCTGACAATGACAAAAATACTTCTTTTACTTCGAAGCATAAATGATGTTGTATATTTATTGAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCACCTGAATCAACGGTGGTTGGGGCTGGAGATTTAGTTGACAATCCCAAAAAAATTGCTCTTAATTACGTGAAGGGTTACTTTTTTTTTGACTTATTTGTCGTATCACCACCTCTACCTCAGATAATGATACTTTTTGTCCTACCGACTTCCTTGGGATCACCAGGACCAAATTCTACTAAGAATGTTCTACATGTAGCAGTCCTTTTGCAGTATGTTCCCAGATTATTCAGGTTTTTGCCTCTGCTAATTGGCCAGTCTCCAACTGGATTCATATTTGAGTCAGCATGGGTGAATTTCGTCATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGATCTTGCTGGTACCTCTTTGGTTTACAGAGGGTTAATCAATGTTTGCAAAATGTCTGCCATAGTTCTATTAAACATGGATGCACGGAATTGATTGATTGTGATTCTAGGATGGGCCAGATGTCAGCTATGTGGAGAAACAATACAAATGCCACTGCTTGTTTGAATTCCACATCTGGTTCTTTCCCTTATGGGATATATGACAGAGCTGTAGCACTTACTACAGAAACTAAGGTGGTCAAGAAATATGTGTTTGCACTGTTTTGGGGCTTCCAACAAATCAGTACTCTGGCCGGTAATCAAAATCCAAGCTATTTTGAGTGGGAGGTCCTTTTTACAATGGCCATCATAGGATTGGGACTTTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAGATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCACCGTCGCTTGCCAGAAGGTCTCAGAAGGAAAGTACGTCAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGGGTTAATGAAGAAATGCTTCTAGAGAATTTGCCGGAAGATCTCCAGACAGACATTAGACGCCATCTCTTCAAATTTGCAAAAAAGGTTCGAATTTTTGCCCTGATGGATGAACCTATCTTAGATGCTATTCGTGAGAGACTTAAACAGAAGACATACATCAAAGGAAGTAGAATTTTGAGTCGGGGAAGTCTTGTAGAAAAGATGGTCTTTGTTGTGCGTGGAAAATTAGAGAGCATTGGAGAAGATGGAATTGGAGTTCCCTTATCTGAAGGAGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGAATTCTTCTGTAAGCAAAGATGGTAAAAAAGTAAGGCTTCCAGGACAGAGGTTGCTAAGCAACAGAACTGTGAGATGCTTAACAAATGTGGAGGCATTTTCACTCCATGCTGCAGACCTTGAAGAAGTAACATTTCTTTTCACAAGATTCTTGCGGAGCCCTCAGGTCCAAGGAGCTCTAAGGTATGAATCACCTTACTGGAGATCCCTTGCAGCAAACAGAATTCAGGTTGCATGGAGATACAGGAAGAAACGTCTAGGTCGTGCTCGTGCTAATATCTCACAATCAGATCAAACACCGAAGTCGTAG 2322 0.4152 MPQFDKDGVPVLLETHAQQSDEFMDSNFRRLSYRTRSASISIPMVPIEPYEGGTHLVGHTGPLRSVRKPPSGQMSGPLYATTAGAGNHFQHSIAVPGKKAVEGKTQQLSTFDGTDENLWNNNYDRKNEHLLRSGQLGMCNDPYCTTCPTYIKASQKGNPKVSTVFDSKFHNSLYGEAKGFGRKLFSFCSSCVPGVMNPHAKVVQQWNKFLAMFCLMAIFVDPLFFFLFYVRKDSNCIVIDLTMTKILLLLRSINDVVYLLNILLQFRLAYVSPESTVVGAGDLVDNPKKIALNYVKGYFFFDLFVVSPPLPQIMILFVLPTSLGSPGPNSTKNVLHVAVLLQYVPRLFRFLPLLIGQSPTGFIFESAWVNFVINLLIFMLSGHVVGSCWYLFGLQRVNQCLQNVCHSSIKHGCTELIDCDSRMGQMSAMWRNNTNATACLNSTSGSFPYGIYDRAVALTTETKVVKKYVFALFWGFQQISTLAGNQNPSYFEWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEGLRRKVRQAERYSWAATRGVNEEMLLENLPEDLQTDIRRHLFKFAKKVRIFALMDEPILDAIRERLKQKTYIKGSRILSRGSLVEKMVFVVRGKLESIGEDGIGVPLSEGDACGEELLTWYLENSSVSKDGKKVRLPGQRLLSNRTVRCLTNVEAFSLHAADLEEVTFLFTRFLRSPQVQGALRYESPYWRSLAANRIQVAWRYRKKRLGRARANISQSDQTPKS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2290 773 CDD CAP_ED 598 714 IPR000595 -
Lja2g2290 773 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 762 - -
Lja2g2290 773 Pfam Ion transport protein 208 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja2g2290 773 SUPERFAMILY cAMP-binding domain-like 526 718 IPR018490 -
Lja2g2290 773 Gene3D Jelly Rolls 596 720 IPR014710 -
Lja2g2290 773 Gene3D - 206 523 - -
Lja2g2290 773 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
Lja2g2290 773 SUPERFAMILY Voltage-gated potassium channels 201 526 - -
Lja2g2290 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 762 - -
Lja2g2290 773 Gene3D Helix hairpin bin 525 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2290 Lja-Chr2 27053466 27063591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2290 5 676 Ion Channels AT3G17700 59.675 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2290 K05391 - ccaj:109789004 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2290 2 27053466 27063591 Lja2g2290 2 27053466 27063591 ECH