Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2289 ATGGCTCAATTCGATAAAGATGAGGTGCCAATGCTGTCAGAAACACGCGCTCAACAATTTGATGAGCTCGAGGATTTTAATGTCCGGAGGTTCTCATCCAGGACACGGAGTGCATCAATGTCTATTCCTATGGTCTCCATGGAACCATATGATACAAAACCTAATCTCGTTGGACATACCGGTCCACTTCGCAGTTTGAAGAAAACCCCTTTTGTGCAGATGAGTGGTCCACTATATGCTACTCCAGCTGGAACTGGAAATCTTTTGCAGCATAGTATTGCTGTGGCGGGAGAAAAAACAGCAGAGAGCAACACCGATGATTTTTCTACTTTTGATGGTTCAGATGAAAATCACTGGAACAACAACAATGATAGAAAAAATGAACACTTACTGAGGTCTGGGCAGCTGGGAATGTGTAATGATCCATATTGCACTACTTGCCCTACTTACTTCAAGCCTTCTCAGAAAAGAAATCCAAAAGCTTCAACTGTATTTGATCCCAAGTTTCATAATTTTCTTTATGGGGATGCGAAAGGTTTTGGAAGAAAACTTCTTTCTCTCTGCTCTTCATGTGTTCCTGGAGTTATGAACCCGCACGCTAAAGTTGTACAACATTGGAACCAGATTTTGGGAATTTTTTTCTTGGTGGCAATTTTTGTTGATCCCTTGTTTTTCTTCTTAATTTATGTGAAGAAGGATTCTAAATGTATTGCTATCAACTGGACAATGACAAAAACAATTGTTTCACTTCGAAGCATAAATGATGTTGTATATTTCTTCAACATTCTTCTGCAGTTTAGGTTGGCTTATGTTTCACCTGAGTCAACAGTGGTTGGTGCTGGAGATTTGGTTGACCATCCCAAAAAAATTGCTCTTAATTACTTGAAGGGTTATTTTTTGTTCGACTTATTTCTTGTATTACCTCTACCTCAGATTATGATATTGTTTGTCCTACCAAATTCCTTGGGGTCATCAGGAGCAAATTCTACTAAGAATCTTCTACGTGCAGCAGTCCTTGTACAGTATATTCCCAGATTATTCAGGGTTTTGCCTCTGCTAATTGGCCAATCTCCAACTGGATTCATATTTGAGTCAGCCTGGGCAAACTTTATTATAAATCTTCTCATTTTTATGCTATCTGGCCATTCTGTTGGATCTTGCTGGTACCTCTTTGGCCTACAGAGGGTAAATCAATGTTTGCGTGATGCCTGCCATCGTTCTAATATTAGTAATATGATTGGATGCATGGAATTGATTGATTGTGATCCTAAGATGGCCAACTTATCACGTCTGTGGAGCATCAATGAAAATGCCACTGCTTGTTTGGATTCCGCATCTAATGCTTTCCCTTATGGGATATATGACAAAGCTGTTGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTGTATGCGCTGTTTTGGGGCTTTCAACAAATCAGTACTCTGGCTGGTAATCAAGAGCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATCTGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAGATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGACCATCTTAGAAGGAGAGTACGAGAGGCTGAACGATATAGTTGGGCTGCAACAAGGGGGGTTCATGAGGAAATGCTTCTAGAGAATTTGCCGGAAGATCTCCAGACTGACATAAGACGTCATCTCTTCAAACTTGTTAAAAAAGTTCGAATTTTTGCCCTGATGGATGAACCTTGCTTAGATGCCATTCGTGAGAGACTAAAACAGAAGACATACATCAAAGGAAGTAGAATTTTGACTAGGGGTGGTCTTGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTAGAGAGCATCGGAGAAGATGGAATTGGAGTTCCATTATCGGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAACATTCTTCTGTAAGCAAAGATGGTAAAAAAGTAAGGCTTCCAGGACAGAGGTTGCAGAGCAACAGAACAGTAAAATGCTTAACAAATGTGGAGGGATTTTCACTCCGTGCTGCAGATCTTGAAGAAGTAACAATTCTTTTCACAAGATTCTTGCGGAGCCCTCAAGTCCAAGGAGCTTTAAGGTATGATTCACCTTACTGGAGATCCCTTGCAGCAAACAGAATTCAGGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGCTAATACCTCACAAGGGCTTTGA 2307 0.4114 MAQFDKDEVPMLSETRAQQFDELEDFNVRRFSSRTRSASMSIPMVSMEPYDTKPNLVGHTGPLRSLKKTPFVQMSGPLYATPAGTGNLLQHSIAVAGEKTAESNTDDFSTFDGSDENHWNNNNDRKNEHLLRSGQLGMCNDPYCTTCPTYFKPSQKRNPKASTVFDPKFHNFLYGDAKGFGRKLLSLCSSCVPGVMNPHAKVVQHWNQILGIFFLVAIFVDPLFFFLIYVKKDSKCIAINWTMTKTIVSLRSINDVVYFFNILLQFRLAYVSPESTVVGAGDLVDHPKKIALNYLKGYFLFDLFLVLPLPQIMILFVLPNSLGSSGANSTKNLLRAAVLVQYIPRLFRVLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHSVGSCWYLFGLQRVNQCLRDACHRSNISNMIGCMELIDCDPKMANLSRLWSINENATACLDSASNAFPYGIYDKAVALTTETRVVNKYVYALFWGFQQISTLAGNQEPSYFVWEVLFTMAIIGSGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPDHLRRRVREAERYSWAATRGVHEEMLLENLPEDLQTDIRRHLFKLVKKVRIFALMDEPCLDAIRERLKQKTYIKGSRILTRGGLVEKMVFVVRGKLESIGEDGIGVPLSEGDACGEELLTWYLEHSSVSKDGKKVRLPGQRLQSNRTVKCLTNVEGFSLRAADLEEVTILFTRFLRSPQVQGALRYDSPYWRSLAANRIQVAWRYRKKRLSRANTSQGL* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2289 768 CDD CAP_ED 600 716 IPR000595 -
Lja2g2289 768 Gene3D Jelly Rolls 598 722 IPR014710 -
Lja2g2289 768 ProSiteProfiles cAMP/cGMP binding motif profile. 600 668 IPR000595 -
Lja2g2289 768 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 765 - -
Lja2g2289 768 SUPERFAMILY Voltage-gated potassium channels 201 528 - -
Lja2g2289 768 SUPERFAMILY cAMP-binding domain-like 528 717 IPR018490 -
Lja2g2289 768 Gene3D Helix hairpin bin 527 592 - -
Lja2g2289 768 Pfam Ion transport protein 208 528 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja2g2289 768 Gene3D - 184 525 - -
Lja2g2289 768 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2289 Lja-Chr2 26995064 27004643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2289 5 678 Ion Channels AT3G17700 60.850 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2289 K05391 - ccaj:109789004 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2289 2 26995064 27004643 Lja2g2289 2 26995064 27004643 ECH