Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2287 ATGTTCCCCGCCATATACAACAGCATCTCCCAATGCCTCAACTCAACCACCGCCACTCTCTTCCACGCTCGACAAGCCCATGCCCACTTCCTCAAATTCAACCTCTTCACCGACATCCACCTCACCACACGCCTCCTCTCTCTCTACGCCGACAACCTCAGCTCCTCCCAGCTCAACCTCGTACTCTCTTCCCTCCCTCAACCCTCCCTCTTCTCCTTCTCCTCCATCATCCAAGCTTTTGTCAAATCCCACCACTTCCGCCATGTCCTCGGCGCGTTCTCTGAAATGGGTTCTCGCGGCATTGTCCCTGATGGGTTTCTTCTCCCAAGTGCCATCAAGGCTTGTGCCGCGTTGCAAGCGTTGAAACCTGGGATGCAGGTTCATGGGTTTGCTTATGCTTCTGGGTTTGTTTCGGATTCGGTTGTGATGTCTTCGTTTGTGCATATGTACTTGAAATGTGACCAGCTTGGGTTTGCCCAGAAGCTGTTTGAGAGTATGCCTGACAGGGATGTGGTTGCTTGGAGTGCTATGATTTCCGGTTACTCGCGTCGTGGACTTGTTGACAAGGCGAAGGAGCTCTTTTCTGAGATGAGGAATGAGGGCGTGGAACCTAATTTGGTGTCGTGGAATGGCATGGTTGCTGGGTTCAGTGGTACTGGTTCGCATGCTGAGGCGGTGAAGTTGTTTCAAATGATGTTATCAGAAGGGTTTTTGCCTGATAGGTCTACTGTTTCTTGTGTTCTTCCTTCTATAGGGATCTTGGAGGATGTGGTGATGGGTGCGCAGGTTCATGGTTATGTGATCAAGCAAGGGTTGGGATCGGAAAGTTTTGTGGTGAGTGCACTTCTTGACATGTATGGAAAATGCGGGCGTGAATTTGAGATGTCTCGGGTGTTTGATGAAGTGGATCAAAAAGAAGTAGGTTCTTTGAATGCTTTTCTTACTGGTTTGTCACGTAATGGTCTGGTTGACACTGCACTGGAGGTGTTTAACAAGTTTAAGGCCCAAGAAATGGAGTTGAATGTTGTGACATGGACGTCAATAATAGCCTGCTGCTCCCAGAATGGGAAAGATCTGGAAGCTTTGGAGCTTTTTAGAAATATGCAGGCTGATGGGGTGGAGCCTAATGCTGTAACAATCCCTAGCTTAATTCCTGCTTGTGGAAATATTTCAGCATTAATGCATGGGAAGGAAATACATTGCTTTTCTCTCAGGAAGGGAATTTCTGATGATGTATATGTAGGCAGTGCATTAATAGATATGTATGCCAAGTGCGGAAGAATCCAGTTATCTCGACGTTGTTTTGATAAAATGTCAGCCCCAAATTTGGTTTCTTGGAATGCAATTATGAAAGGATATGCAATGCATGGAAAGGCTAAGGATACAATTGAGATGTTTCATATGATGCTGCAAAGGGGCCAGAAGCCTGACCCAGTTACCTTCACATGTTTGTTGTCTGCATGCACTCAAAATGGCTTAACAGAAGAGGGATGGTACTATTTTAATAGCATCTCCAAAGAGCATGGCGTCGAAGCTAAAATGGAACATTATGCTTGCATGAAATGGAAAGTACATAAATCAATATCTGGAGGCATGGCTAATTTTAAAAATGATGAGGTGCCGATGCTGGCAGAAACAAAGGCACGAGCACGGCCAGGTGATGGACCTTTTGATTCTAAATTCCAAAGGCTTGTGACCAGGACACAAAGTGCATCGACTATTTCTGTCCCTTTGAGCTCCATGGAACAATATGAGGGAGATACTAGTGTTATAAGACATACTGGTCCACTTCAGAGTAAGAGGAATGCACCCTTAATGCAGATGAGTGGTCCACTAAAAGCTACCCCTGGAACTGCAAACCTTTTGCAGCAGCATATTATTGGAATAGGAAACAGAGCAGAGGAGAGAAAGACAGAAAATTTTGCTGCTTTCCGCAGCACGGGTCCAAATTATTGGGATAACAACCACGATAGAAAAAATGAACACCTTCTAAGGTCCGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCGACATACTTCAACGCTTCTCAACAAAGAAAACCAAAGCCGTCGACTATATTTGATCACAAGTTTCACAATGTTCTCTATGGGGATGCCAAAGGTTTTGCAAGAAAACTCTATTTATTCTGCTCTTCATATTTTCCTGGAGTTATGAATCCTCACACTAAAGTCATTCAACAATGGAACAAGTTTTTGGCCATATTTTGCTTGATAGCTATTTTTGTGGATCCATTGTTCTTTTTCTTACTTTATGTGCAGCAGGATTATAAATGTATTGTAATCAACTGGGCGATGACAATAGGACTTGTTTTACTTAGAAGCATAAATGATTTCGTATATCTCCTAAACATTTTTCTCCAGTTTAAGTTGGCTTATGTATCTCCTGAGTCAACAGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAGAATTGCTCGTCATTACCTGCGGGGTTATTTTCTTATCGACTTATTCATTGTATTTCCTCTTCCTCAGATAATGATATTGACTGTCCTGCCAAATACCTTGTGGGGAGCAAATCATGCGAAGAATCTTCTACGAGCAGCAATCTTAGTGCAATATATTCCCAAGTTATTCAGGTTTCTGCCGCTGCTAATTGGGCAATCTCCAACAGGATTCATATTTGAGTCAGCCAGGGCAAATTTTGTTATAAATCTTCTTATTTTTATGCTTGCTAGCCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTCTACAGAGAGTTAATCAATGTTTGCGAGATGCCTGCCATAAGTCTAATATTACTGGATGCATGAAATTCATTGATTGTGGACGTGGACGTGGACTTAATGGAAACACATCAAATCAATGGAAGAACAATACAGATGCCATTAATTGTTTAAATCCCCCATCTGATGGTGGTTTTCCTTATGGGATCTATGAGCTTGCTGTGCCACTCACTATAGAAACTAATGTGGTCAACAAATATGTGTATTCCCTTTTTTGGGGATTCCAGCAAATCAGTACTATAGCTGGTAATCAAGTGCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGTCCATCATGGGATTGGGACTCTTGCTTTTTGCAATTCTCATTGGAAACATACAGAATTTTCTACAGGCTCTTGGGCGGAGGAAGCTGGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGGCGCTTACCAGTAGACCTGAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGGTTATGGAGAATCTGCCAGAAGATCTGCAGAGAGACATTAGACGCCATCTCTTCAGATTTGTTAAGGAAATTCGAATTTTTTCCTTGATGGATGTGCCCATCTTAGACGCTGTATGTGAGAGACTAAGACAAAAAACATACATTAAAGGAAGTAAAATTTTGAGTCAGGGCAGTTTGATAGAGAAGATGGTATTTGTGGTGCGTGGAAAATTGGAGAGCATTGGAGAGGATGGAACTAGAATGCCATTATCTGAAGGGGACGCTTGTGGTGAAGAACTTATGACATGGTATCTTGAACATTCTTCTGTAAGCTCAGATGGTAGAAAAGTAAGGCTTCCTGGACAGAGGTTGGTTAGCAACAGGACAGTAAAGTGCTTGACAAATGTGGAGGCATTTTCACTCTCTGCCGCCGACCTTGAAGAAGTCACGATACTTTTCACAAGATTCTTGCGGAGCCCTCAGGTCCAAGGAGCTTTAAGGTATGAATCGCCTTATTGGAGATCCCTTGCCGCAAACCGCATTCAAGTTGCATGGAGATATAGACAGAAACGTCTGAGTCGTGTTAATTCCTCAGTAACAACTAAACATTGA 3909 0.4321 MFPAIYNSISQCLNSTTATLFHARQAHAHFLKFNLFTDIHLTTRLLSLYADNLSSSQLNLVLSSLPQPSLFSFSSIIQAFVKSHHFRHVLGAFSEMGSRGIVPDGFLLPSAIKACAALQALKPGMQVHGFAYASGFVSDSVVMSSFVHMYLKCDQLGFAQKLFESMPDRDVVAWSAMISGYSRRGLVDKAKELFSEMRNEGVEPNLVSWNGMVAGFSGTGSHAEAVKLFQMMLSEGFLPDRSTVSCVLPSIGILEDVVMGAQVHGYVIKQGLGSESFVVSALLDMYGKCGREFEMSRVFDEVDQKEVGSLNAFLTGLSRNGLVDTALEVFNKFKAQEMELNVVTWTSIIACCSQNGKDLEALELFRNMQADGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRKGISDDVYVGSALIDMYAKCGRIQLSRRCFDKMSAPNLVSWNAIMKGYAMHGKAKDTIEMFHMMLQRGQKPDPVTFTCLLSACTQNGLTEEGWYYFNSISKEHGVEAKMEHYACMKWKVHKSISGGMANFKNDEVPMLAETKARARPGDGPFDSKFQRLVTRTQSASTISVPLSSMEQYEGDTSVIRHTGPLQSKRNAPLMQMSGPLKATPGTANLLQQHIIGIGNRAEERKTENFAAFRSTGPNYWDNNHDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRKPKPSTIFDHKFHNVLYGDAKGFARKLYLFCSSYFPGVMNPHTKVIQQWNKFLAIFCLIAIFVDPLFFFLLYVQQDYKCIVINWAMTIGLVLLRSINDFVYLLNIFLQFKLAYVSPESTVVGAGDLVDHPKRIARHYLRGYFLIDLFIVFPLPQIMILTVLPNTLWGANHAKNLLRAAILVQYIPKLFRFLPLLIGQSPTGFIFESARANFVINLLIFMLASHVVGSCWYLFGLQRVNQCLRDACHKSNITGCMKFIDCGRGRGLNGNTSNQWKNNTDAINCLNPPSDGGFPYGIYELAVPLTIETNVVNKYVYSLFWGFQQISTIAGNQVPSYFVWEVLFTMSIMGLGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPVDLRRRVRQAERYNWAATRGVNEEMVMENLPEDLQRDIRRHLFRFVKEIRIFSLMDVPILDAVCERLRQKTYIKGSKILSQGSLIEKMVFVVRGKLESIGEDGTRMPLSEGDACGEELMTWYLEHSSVSSDGRKVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRFLRSPQVQGALRYESPYWRSLAANRIQVAWRYRQKRLSRVNSSVTTKH* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2287 1302 SUPERFAMILY cAMP-binding domain-like 1060 1249 IPR018490 -
Lja2g2287 1302 Gene3D - 734 1057 - -
Lja2g2287 1302 Pfam Pentatricopeptide repeat domain 329 389 IPR002885 -
Lja2g2287 1302 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Lja2g2287 1302 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 535 1297 - -
Lja2g2287 1302 Pfam PPR repeat 71 101 IPR002885 -
Lja2g2287 1302 Pfam PPR repeat 416 438 IPR002885 -
Lja2g2287 1302 SUPERFAMILY Voltage-gated potassium channels 731 1060 - -
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Lja2g2287 1302 Pfam Ion transport protein 741 1059 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja2g2287 1302 ProSiteProfiles cAMP/cGMP binding motif profile. 1132 1197 IPR000595 -
Lja2g2287 1302 Gene3D Jelly Rolls 1130 1254 IPR014710 -
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 512 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 479 510 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 72 104 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 310 341 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Lja2g2287 1302 TIGRFAM PPR: pentatricopeptide repeat domain 444 477 IPR002885 -
Lja2g2287 1302 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 535 1297 - -
Lja2g2287 1302 CDD CAP_ED 1132 1248 IPR000595 -
Lja2g2287 1302 Gene3D Tetratricopeptide repeat domain 71 221 IPR011990 GO:0005515
Lja2g2287 1302 Gene3D Tetratricopeptide repeat domain 222 390 IPR011990 GO:0005515
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Lja2g2287 1302 Pfam PPR repeat family 441 488 IPR002885 -
Lja2g2287 1302 Pfam PPR repeat family 169 212 IPR002885 -
Lja2g2287 1302 Gene3D Helix hairpin bin 1060 1124 - -
Lja2g2287 1302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2287 Lja-Chr2 26958541 26978845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2287 536 1210 Ion Channels AT3G17700 59.270 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2287 K05391 - gmx:100795427 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2287 2 26958541 26978845 Lja2g2287 2 26958541 26978845 ECH