Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2284 ATGTGTAGTAGAGGCCATTGGAGGCCATCTGAGGATGAGAAGCTCCGGGAGTTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTCAAAGGAAGATCAGGGAAAAGTTGCAGGCTGAGATGGTTCAATCAACTGGATCCAAGAATAAACAGGAGTCCTTTCACTGAAGAAGAAGAAGAGCGCCTTCTAGCTTCTCACAGGATTCATGGTAACAGATGGGCCGTGATTGCGAGGCACTTCCCCGGACGAACCGATAACGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGGAACCGTCGAGAAAGGTACAAGGAGGACGTTTATGCGAAAGGGCCTCTTCACCACACAAACAATTTCTCTCCACAGGATCATCATCAAACAAACTTTGAGACAACAACATGTCTCCCTTCGTTTGTTGAGAAGCTGTATCATGAAAAGTATTATCCTTGTGTCACGTATAGCCCTTTCCGGTTTCCCAAGAGGTTTAACTTTCAAGATCCAAGTTCTTGTTCCACAAAGCTTCTTCAAGAAAGAAGCAAATCTGTTGAGTTCTATGATTTTCTTCAAGTAAATACTGAATCCAGTAAAAGTGAAGTTACAGACAATGCCAGAAGAGATGATGAGGAAGTCAATCAAAATGCTATGGGAGAGCAGAATAAGGATTGTGGCGTTCCATTCATTGATTTTTTGTCTACTGGAAGCAGCTAA 726 0.4366 MCSRGHWRPSEDEKLRELVERYGPHNWNAIAEKLKGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARNRRERYKEDVYAKGPLHHTNNFSPQDHHQTNFETTTCLPSFVEKLYHEKYYPCVTYSPFRFPKRFNFQDPSSCSTKLLQERSKSVEFYDFLQVNTESSKSEVTDNARRDDEEVNQNAMGEQNKDCGVPFIDFLSTGSS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2284 241 PANTHER MYB PROTEIN-RELATED 1 241 - -
Lja2g2284 241 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lja2g2284 241 MobiDBLite consensus disorder prediction 202 228 - -
Lja2g2284 241 PANTHER MYB-RELATED PROTEIN A-LIKE 1 241 - -
Lja2g2284 241 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lja2g2284 241 SMART sant 3 52 IPR001005 -
Lja2g2284 241 SMART sant 55 103 IPR001005 -
Lja2g2284 241 Pfam Myb-like DNA-binding domain 7 67 - -
Lja2g2284 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Lja2g2284 241 CDD SANT 7 48 IPR001005 -
Lja2g2284 241 MobiDBLite consensus disorder prediction 204 220 - -
Lja2g2284 241 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Lja2g2284 241 CDD SANT 58 101 IPR001005 -
Lja2g2284 241 Gene3D - 57 132 - -
Lja2g2284 241 Gene3D - 4 55 - -
Lja2g2284 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2284 Lja-Chr2 26783174 26793445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2284 1 241 MYB Transcription Factor Family AT1G17950 55.556 8.19e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2284 Myb_DNA-bind_6 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2284 K09422 - gmx:100811746 358.607