LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g2280	ATGGCTGTGCCACAATCAACGTCATCTTCCTCCTCCTTATTCACATATGATGTGTTCCTCAGCTTCAGAGGCTGTGATACTCGTCGCCATTTTGCTAGTTCTCTCTACGAAGCTCTTCGTAAGATGGGAATCCACACGTTCATGGACGACAAGGAACTTGAGAGAGAGGAGGAAATCACACCGGCACTCGTCAAGGCCATTGACGAGTCCAGGATTGCTATCCCTGTATTGTCAGCAACCTATGCTTCTTCTTCCTTTTGCTTGGACGAACTTGTCACCATCATGGACCGCATTAAGAACCAAGGTCGGTTGGTCTTACCTGTCTTCTATGAGGTGGATCCTTCTGAGGTGAGGCATCAAACTGGGAGTTACAAAAAAGATCTGGCTAATCGTGAGGCCAGGTTTGAAGAGAACAAGAAAAAGTTCATGGAAAACATGGAGAGGTTGCGGAAATGGAAGGAAGCTCTTAGCCAAGTAGCCAACTTATCAGGCTATCATTACAGCAAACTTGGGGATGAAAAGGAACATGAGTTTATTGGAGAGATAGTTAAACAAGTCTCCAATAAGATCAACCGTGTTACTTTACATGTTGTCAAATTTCCTGTTGGACTAGATTCTAAAGTGCTAGAAGTAAAATCACTTCTAGATGTTGCATCTGATGATGGAGTTCGCATGGTGGGGATTTATGGAATTGGAGGAGCAGGGAAAACAACACTTGCAAGAGCAGTTTACAATTCCATTGTTGACAAGTTTGAATGTTTGTGTTTTCTTCATAACGTGAGGGAAAATTCAAGCAAATTGGAGCATCTCCAACAGCTTCTTCTTTCTAAGACAATTGGTCTGAACACTGGCATAGGAGATGTCCATGAAGGAATTCCAATAATAAAGCGAAGGTTACAACGAATGAAGGTTCTTTTAATTCTTGATGGCGTTGACAACCTGAATCAGCTGCAGGCTATGGTTGGAGAAATTGATTGGTTTGGTCCTGGCAGTAGAATTATCATTACCACTCGAAACAAACACTTGCTAACAACTCATGGGATTGAAAGAACATATGAAGTAAATGTGTTAAATGAGGAAGAAGCTCTTGAGTTGTTGACCTTGAATGCTTTCAGAAATAACATAGTTGATTCAAGTTACAAGGACCTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTGTAGTAAAACTGTAAAAGAATGGAAATCAGCTCTAGATCAGTATGAAAGGATTCCGGACAAAGATATCCAAAAGGTACTTAAAGTAAGCTATGATGATTTGGGAGAGGAAGAAAAAAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCATCCATTGGCCGAGGTTGAAGATATACTCCATGCTCATCATGGTGGTTGCCTGAAACATCACATTGGAATATTGGTTGATAGATCTCTTGTAAAGATCGGTTTGTATGGTAAGGTAACAGTACATGAGTTGATAGAGGATATGGGTAAGGAAATTGTTCGACTAGAAAAAATAAAAGAGCCTGGTGAGCGTACTAGGTTATGGAGCCCTGAAGATATACTTCAAGTTTTAGAGGAGGAGACGGTGAGTAAGTTAGATATAAATGGTTTGGTTTTTCATCTTAAAACCTTGATTTATTGTTTTAGACCGTTATATGCTCTCGTTACAATTGTTTCTATATATGCACGTTTAAATCTTACATGTATATATTGTGCTTTATTTGTGCATTGTCTTAAAAAGGGAACCAGAGACATTGAAATCATCTACCTAGATTTCTCCTTGACTGGCGAAGAAGAAATAGAATGGGATGGAAAGGGCTTCGAGAATATGAAAAAGCTCAGAACACTTATTATTAGAAATGCTCGTTTTTCTAAAGCTCCCGAATATCTCCCAAATAGTTTGAGAGTATTGGAATGGGAGAGATATCCTTCAGAGTATTTACCATCTAATTTTAATCCGAAGCAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCATCCAACTTGGCTGAGTTATTGAAGACAACACCAAGAAGCCTGTGA	2076	0.394	MAVPQSTSSSSSLFTYDVFLSFRGCDTRRHFASSLYEALRKMGIHTFMDDKELEREEEITPALVKAIDESRIAIPVLSATYASSSFCLDELVTIMDRIKNQGRLVLPVFYEVDPSEVRHQTGSYKKDLANREARFEENKKKFMENMERLRKWKEALSQVANLSGYHYSKLGDEKEHEFIGEIVKQVSNKINRVTLHVVKFPVGLDSKVLEVKSLLDVASDDGVRMVGIYGIGGAGKTTLARAVYNSIVDKFECLCFLHNVRENSSKLEHLQQLLLSKTIGLNTGIGDVHEGIPIIKRRLQRMKVLLILDGVDNLNQLQAMVGEIDWFGPGSRIIITTRNKHLLTTHGIERTYEVNVLNEEEALELLTLNAFRNNIVDSSYKDLINRAVTYASGLPLALEVIGSNLCSKTVKEWKSALDQYERIPDKDIQKVLKVSYDDLGEEEKNVFLDIACCFKGHPLAEVEDILHAHHGGCLKHHIGILVDRSLVKIGLYGKVTVHELIEDMGKEIVRLEKIKEPGERTRLWSPEDILQVLEEETVSKLDINGLVFHLKTLIYCFRPLYALVTIVSIYARLNLTCIYCALFVHCLKKGTRDIEIIYLDFSLTGEEEIEWDGKGFENMKKLRTLIIRNARFSKAPEYLPNSLRVLEWERYPSEYLPSNFNPKQLAICKLPRYCFVSSNLAELLKTTPRSL*	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g2280	691	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	545	IPR044974	GO:0006952
	Lja2g2280	691	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	588	674	IPR044974	GO:0006952
	Lja2g2280	691	SUPERFAMILY	"Winged helix" DNA-binding domain	427	534	IPR036390	-
	Lja2g2280	691	Gene3D	-	188	349	IPR027417	-
	Lja2g2280	691	Pfam	TIR domain	16	192	IPR000157	GO:0007165
	Lja2g2280	691	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	450	IPR027417	-
	Lja2g2280	691	Coils	Coil	125	146	-	-
	Lja2g2280	691	PRINTS	Disease resistance protein signature	225	240	-	-
	Lja2g2280	691	PRINTS	Disease resistance protein signature	391	405	-	-
	Lja2g2280	691	PRINTS	Disease resistance protein signature	617	633	-	-
	Lja2g2280	691	PRINTS	Disease resistance protein signature	298	312	-	-
	Lja2g2280	691	Pfam	NB-ARC domain	208	437	IPR002182	GO:0043531
	Lja2g2280	691	Gene3D	-	356	440	IPR042197	-
	Lja2g2280	691	SMART	till_3	15	162	IPR000157	GO:0007165
	Lja2g2280	691	ProSiteProfiles	TIR domain profile.	14	190	IPR000157	GO:0007165
	Lja2g2280	691	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	18	545	-	-
	Lja2g2280	691	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	588	674	-	-
	Lja2g2280	691	Gene3D	-	13	187	IPR035897	-
	Lja2g2280	691	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	165	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g2280	Lja-Chr2	26717934	26721383	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g2280	11	685	WRKY Transcription Factor Family	AT4G12020	26.571	6.38e-59	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g2280	-		-	gmx:100784366	713.761