Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2278 ATGGCTGTGCCACCATCATCTTCCTCCTCTCTATTCGCCTATGATGTATTCATCAGCTTCAGAGGCTGTGATACTCGTCATGGTTTTACCGGTAATTTCTACAAAGCTCTTTGTGACAAGGGAATCCGCACCTTCTTTGATGATAAGGAGCTGGAGAGAGGGGAAGAAATCACACCTGCACTTGTCAAAGCCATTCAAGAGTCCAGGATTGCTATCCCTGTATTCTCAGCAAGCTATGCTTCTTCTTCCTTTTGCTTGGATGAACTTGTCACCATCATTGACCGCATTAAGAACCAAGGTCGGTTGGTCTTGCCTGTCTTTTATGATGTTGATCCTTCTAAGGTGAGACATCAAACTGGGAGTTACAAAGAAGATCTGGATAAGCATCAGGTGAAGTTTGAACAGAATATGGAAAAGTTCACGGATAACATGGAGAGGTTGAAGAAATGGAAGACAGCACTTAGCCAAGCAGCCAACTTGTCAGGCTATCATTTCAATCTTGGGGATGGATATGAATATGAGTTTATTGGAAAGATAGTTAAAGAAGTCTCCAATAAGATCAATCGTGTTCCCTTGTTTGTTGCAAAATATCCTGTTGGATTAGATTCTAAAGTGCTAGAAGTAATATCACTTCTAGATGTTGCATCCAATGATGGGGTTTGCATGGTAGGGATTTACGGATTTGGAGGAGTTGGGAAAACAACACTTGCACGAGCAGTTTACAATTCCATTTTTGACAACTTTGAATGTTTATGTTTTCTTCATAATGTGAGAGAAAATTCAAGCAAATTGGAGCGTCTCCAAGAGAAGCTTCTTTCTAAGACAGTTGAACTGGCAATTGACATAGGAGATGTCAATGAAGGAATTCCAATAATAAAACAAAGGTTACAACGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGACCAATTGAAGCAGTTGCAGGCTATGGTTGGAGGAATTGATTGGTTCGGTCCAGGCAGTAGAGTTATCATTACCACACGAGACAAAAATTTGCTAACAATCCATGAGATTGAAAGAACATATGAAGTAAATGTATTAAATGAGAAAGAAGCTCTTGATTTGTTGACCTTGAATGCTTTCAAAAATAACAAAGTAGATTCAAGTTACAAGGACGTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACTTGTTTGGAAAAAATATAGCAGCATGGAATAATACATTAAGTCGGTATGAAAGGATTCCGGATAAAGATATCCAACAGATACTAAAAGTGAGCTTTGATGCTTTGGAGGAGGAAGAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCAATCATCATCTTCCTTCACCTATGGTTTCACCTACGACGTTTTCCTCAGCTCTAGAGGCTCTGATACTCGCTATGGCTTTACTGGCAATCTCTGGAAATCTCTTTCCGGCCGTGGAATCCACACTTTCATTGATGACAAGGATCTTGAGAGAGGGGATGAAATCACACCAGCGCTTATCAAGGCCATTGAAGAATCAAGAATTGTCATTCCGGTGTTCTCTAACAACGATGCTTCTTCTTCCTTTTGCTTAGACGAACTTGTCAACATCATTGACCGCGTCAAGGCAAAGGGTCGATTAGTTTTACCGATTTTCTATGATGTGGATCCTTCTCATGTTCGTCATCAGACTGGAAGTTATGGAGAAGCACTAGCTAAACATGAAGCTAGATTCAAAGTAAACAAGAAAAAGTTCAATGAGAACATGGAGAGGTTGCAGAAATGGAAGGCGGCATTGCACCAAATAGCTAACTTGTCTGGTCACCATTTTAAACTTGGCTTTCTACTTCTCATGGCTTTGCTACCATCATTTTCCTCACCTTCCTGCATCTACGATGCATTCCTCAGCTTCAGAGGTCCGGATACTCGCCACGGTTTTGCTGGCAATCTCTGGAAAGCTCTTTCGGACCGTGGAATCCACACATTCATCGATGATGTGGAGCTCGAGAGAGGGGAGGAAATCACACCAGCTCTTGTCAAGGCCATTGATGAGTCAAGGATTGCTATCCCCGTGTTCTCCACCAACTACGCCTCTTCTTCATTTTGCTTGGATGAGCTTGTCAACATCCTTGATCACGTTAAGGCAAAGGGTCGATTGGTTTTACCCATTTTCTATAACGTGGATCCTTCTCATGTGCGTCATCAGATTGGGAGTTTTGGAGAAGCACTTGCTAAGCACGAAGAGAGGTTCAAAAATAACATAGGAAATTTCAAGTGTAACATGGAGAGGTTGCAGAAATGGAAGGTGGCTCTGCACCAAGTAGCTAACTTGTCCGGCCACCATTTCAAACTCGGGAATGAGTATGAACATGACTTCATTGCAAAGATAGTTAAGGAGGTCTCTAGTAACATTAATCGCACTCTTTTACATAAAGTACTCTCGCTTCTCGATCTTGCATCCGATGATGGAGTCTTCATGGTAGGGATCTACGGAATTGGGGGAATTGGCAAAACAACACTTGTGCGAGCAGTTTATAATTTGATTGCCAACCGATTTAAAGGTTTTTGTTTTCTTCATAATGTGAGAGAGAATTCAAACAAACATGGCTTAGAACATCTCCAAGAGAAGCTCCTTTCTAAAACACTTGGATTAAACATTAACTTTGGAGAAGTCAGTGAAGGAATTTCAATAATAAAGCAAAGGCTACATAGAAAAAAGGTTCTTTTGGTTTTAGATGACGTTGATGAATTGAAGCAGTTGCAGGCTATGGTTGGAGGACATGATTGGCTTGGTCCTGGCAGCAGAGTTGTTATTACTACTCGAGACAAACATTTGCTAGAAAGACATGGGATTGAAAGAACATATGAAGTGGATGAGTTAAATTGGGAAGAAGCTCTTGCATTGCTTAGGTGGAGTGCTTTTAAAAGTAATGAAGTTGATTCAAAGTACAAGGACATTTTAAACTGTGCAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTGGAAGTGATTGGTTCCAACTTGTTTGGAAAAAGTATTGAAGAATGGAAATCTGCATTAGATAGATACAAAAGGATTCCCAATAAAGAGATCCAAAAGTTACTTAAAGTAAGCTTTGATGCTTTGGAGGAGGAAGATAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAATGGTATCCATTGGTGGAAGTTTACCATATGCTTCATGCTCATCATGGTGTGTGCATGAAACACCACATTGGAGTATTGGTTGAAAAATCTCTCATAAAGATCATAAAGGAGGAGGATTGTAGCAAAATAACAATACATGACTTGATAGAGGATATGGGTAAGGAAATTGTTCGGTTTGAATCGCCAAAAGAGCCTGGGAAGCGCAGTAGGCTATGGTTCCATAAAGATATAGTTCATGTTTTAGAAGACAATACGGTAAGACATATAAATGTTCCAAAATATCTTCCAAGTAGTTTGAGAGTACTGGAATGGCAGAGATATCCTTCACAATATTTACCATCTGATTTCTATCCAAAGAAACTTACCGTATGCAAGTTATCCAACAGTTGCTTCACATCATTCAAATTGTCTGGCTTATTGAATAAGAAGTTCATCAATCTGAAAATTTTGAATTTTGACTATTGTGAATATTTGACTGAGATACCTGATGTATCTGATCTGAACTTGGAAGAACTTTCATTTGAATATTGTGAGGAATTAGTTACAATCCACAGTTCAGTTGGGTTTCTGGATAAACTTAGGATCTTGAATGCTGAAGGTTGCAGTAAGCTTAGGAGTTTTCCACCCATGGAGTTGACCTCTCTTGAAAGACTGAATCTTTCACATTGCAGGAGTCTCGAGAGTTTTCCTGAAATATTAGGAAAGATGGAAAATTTAAAAGGCATTTATTTGGAGCGTACTTCCATAGAAGAATTGCCTTTTTCATTTGGAAATCTTGTTGGGCTTGATACATTAATACTTGAAGAATCTGAAATGTTTAGATTAACAAGTAGCATTGTCATGATGCCAAATCTTTCTGCATTTGTCGCTATGGATTTGAATGGGTTTCTATTGCAAGAAGAGGATGATAAATTAAGCGCAATGATGCCTTCAAATGTACAACATCTTTGTCTCTCGAACTGCAAGCTGTCAGATGAATTTCTTCCACTAAGTCTCTCGTTGTTTGCTAATGTTGAAGAATTAGACTTATCATGGAATGATTTCACATTTCTTCCTGAATGCATCAAAGAATGTCGCTTTTTGTGGAAGCTTACATTGAACAAATGCAAGCGTCTTCGAGAAATTAGAGGGATTCCTCCCAACTTGAAACATTTCTGCGCAATGGACTGCAAATCTTTGACCTCCTCCTGCATAAGCATGTTCCTGAATCAGGAACTCCACGAGGATGGAAACACTGAATTTTGTTTGCCAGGTATTCCATGGATTCCGGAGTGGTTTGAGCACCGAAGCTGGAGACCATCAATTTCTTTCTGGTTTCGTGGCAAGCTCCCTTCCATAGCTCTCTTCCTTGTTAGTAAATCGATGGAGTCTTCACTGGGACTGAATTTTATCATCAATGGCCATGAATATGCTCTTGCTCATATATTTCATCCCGTCTATCGCACGATAAGGCCAGATCATGCATATCTTTATGATCTGCAGCTACAAGGAAGGAAATTCAAAGACATTGACCAAGCACTTTTAGAAAATGAATGGAACCATGCTGAGATTATACTTGTAAGTTTTTTGAGCACATTTATAGGGACTGGAATCCATATATTCAAACAGAAGAGCAGCATCGAGCATATTCGATTCACCTGTCCTTATAAAAAGAGAAAATTAGACTATGATCACCATAACAATCATAGAAATTCCCGAACTATTCGTTCGAGTGCTTGGCATCCTCCTCCAAGGGGGGTATTTAAATTCAATGTTGATGGATCTTCCTGA 4962 0.3942 MAVPPSSSSSLFAYDVFISFRGCDTRHGFTGNFYKALCDKGIRTFFDDKELERGEEITPALVKAIQESRIAIPVFSASYASSSFCLDELVTIIDRIKNQGRLVLPVFYDVDPSKVRHQTGSYKEDLDKHQVKFEQNMEKFTDNMERLKKWKTALSQAANLSGYHFNLGDGYEYEFIGKIVKEVSNKINRVPLFVAKYPVGLDSKVLEVISLLDVASNDGVCMVGIYGFGGVGKTTLARAVYNSIFDNFECLCFLHNVRENSSKLERLQEKLLSKTVELAIDIGDVNEGIPIIKQRLQRKKVLLVLDDVDQLKQLQAMVGGIDWFGPGSRVIITTRDKNLLTIHEIERTYEVNVLNEKEALDLLTLNAFKNNKVDSSYKDVINRAVTYASGLPLALEVIGSNLFGKNIAAWNNTLSRYERIPDKDIQQILKVSFDALEEEEKNVFLDIACCFKGQSSSSFTYGFTYDVFLSSRGSDTRYGFTGNLWKSLSGRGIHTFIDDKDLERGDEITPALIKAIEESRIVIPVFSNNDASSSFCLDELVNIIDRVKAKGRLVLPIFYDVDPSHVRHQTGSYGEALAKHEARFKVNKKKFNENMERLQKWKAALHQIANLSGHHFKLGFLLLMALLPSFSSPSCIYDAFLSFRGPDTRHGFAGNLWKALSDRGIHTFIDDVELERGEEITPALVKAIDESRIAIPVFSTNYASSSFCLDELVNILDHVKAKGRLVLPIFYNVDPSHVRHQIGSFGEALAKHEERFKNNIGNFKCNMERLQKWKVALHQVANLSGHHFKLGNEYEHDFIAKIVKEVSSNINRTLLHKVLSLLDLASDDGVFMVGIYGIGGIGKTTLVRAVYNLIANRFKGFCFLHNVRENSNKHGLEHLQEKLLSKTLGLNINFGEVSEGISIIKQRLHRKKVLLVLDDVDELKQLQAMVGGHDWLGPGSRVVITTRDKHLLERHGIERTYEVDELNWEEALALLRWSAFKSNEVDSKYKDILNCAVTYASGLPLALEVIGSNLFGKSIEEWKSALDRYKRIPNKEIQKLLKVSFDALEEEDKSVFLDIACCFKWYPLVEVYHMLHAHHGVCMKHHIGVLVEKSLIKIIKEEDCSKITIHDLIEDMGKEIVRFESPKEPGKRSRLWFHKDIVHVLEDNTVRHINVPKYLPSSLRVLEWQRYPSQYLPSDFYPKKLTVCKLSNSCFTSFKLSGLLNKKFINLKILNFDYCEYLTEIPDVSDLNLEELSFEYCEELVTIHSSVGFLDKLRILNAEGCSKLRSFPPMELTSLERLNLSHCRSLESFPEILGKMENLKGIYLERTSIEELPFSFGNLVGLDTLILEESEMFRLTSSIVMMPNLSAFVAMDLNGFLLQEEDDKLSAMMPSNVQHLCLSNCKLSDEFLPLSLSLFANVEELDLSWNDFTFLPECIKECRFLWKLTLNKCKRLREIRGIPPNLKHFCAMDCKSLTSSCISMFLNQELHEDGNTEFCLPGIPWIPEWFEHRSWRPSISFWFRGKLPSIALFLVSKSMESSLGLNFIINGHEYALAHIFHPVYRTIRPDHAYLYDLQLQGRKFKDIDQALLENEWNHAEIILVSFLSTFIGTGIHIFKQKSSIEHIRFTCPYKKRKLDYDHHNNHRNSRTIRSSAWHPPPRGVFKFNVDGSS* 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2278 1653 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 163 IPR035897 -
Lja2g2278 1653 SMART till_3 13 160 IPR000157 GO:0007165
Lja2g2278 1653 SMART till_3 464 611 IPR000157 GO:0007165
Lja2g2278 1653 SMART till_3 636 783 IPR000157 GO:0007165
Lja2g2278 1653 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 646 1582 IPR044974 GO:0006952
Lja2g2278 1653 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 456 IPR044974 GO:0006952
Lja2g2278 1653 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 475 617 IPR044974 GO:0006952
Lja2g2278 1653 Gene3D Ribonuclease Inhibitor 1138 1291 IPR032675 -
Lja2g2278 1653 CDD AAA 199 336 - -
Lja2g2278 1653 PRINTS Disease resistance protein signature 907 921 - -
Lja2g2278 1653 PRINTS Disease resistance protein signature 1000 1014 - -
Lja2g2278 1653 PRINTS Disease resistance protein signature 1274 1290 - -
Lja2g2278 1653 PRINTS Disease resistance protein signature 832 847 - -
Lja2g2278 1653 ProSiteProfiles TIR domain profile. 12 187 IPR000157 GO:0007165
Lja2g2278 1653 ProSiteProfiles TIR domain profile. 635 810 IPR000157 GO:0007165
Lja2g2278 1653 SUPERFAMILY L domain-like 1142 1491 - -
Lja2g2278 1653 Pfam NB-ARC domain 205 415 IPR002182 GO:0043531
Lja2g2278 1653 Pfam NB-ARC domain 814 1039 IPR002182 GO:0043531
Lja2g2278 1653 Gene3D - 12 183 IPR035897 -
Lja2g2278 1653 SUPERFAMILY Toll/Interleukin receptor TIR domain 455 613 IPR035897 -
Lja2g2278 1653 ProSiteProfiles TIR domain profile. 463 630 IPR000157 GO:0007165
Lja2g2278 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 814 1059 IPR027417 -
Lja2g2278 1653 Gene3D - 811 961 IPR027417 -
Lja2g2278 1653 SUPERFAMILY Toll/Interleukin receptor TIR domain 627 785 IPR035897 -
Lja2g2278 1653 Gene3D Ribonuclease Inhibitor 1292 1472 IPR032675 -
Lja2g2278 1653 PANTHER ARCHAEAL ATPASE 646 1582 - -
Lja2g2278 1653 PANTHER ARCHAEAL ATPASE 24 456 - -
Lja2g2278 1653 PANTHER ARCHAEAL ATPASE 475 617 - -
Lja2g2278 1653 Pfam TIR domain 13 188 IPR000157 GO:0007165
Lja2g2278 1653 Pfam TIR domain 637 811 IPR000157 GO:0007165
Lja2g2278 1653 Pfam TIR domain 465 607 IPR000157 GO:0007165
Lja2g2278 1653 SMART AAA_5 216 354 IPR003593 -
Lja2g2278 1653 SMART AAA_5 829 966 IPR003593 -
Lja2g2278 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Lja2g2278 1653 Gene3D - 184 347 IPR027417 -
Lja2g2278 1653 SUPERFAMILY "Winged helix" DNA-binding domain 1035 1146 IPR036390 -
Lja2g2278 1653 Gene3D - 353 437 IPR042197 -
Lja2g2278 1653 Gene3D - 965 1049 IPR042197 -
Lja2g2278 1653 Gene3D - 463 619 IPR035897 -
Lja2g2278 1653 Gene3D - 635 810 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2278 Lja-Chr2 26643070 26664566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2278 9 498 WRKY Transcription Factor Family AT4G12020 27.291 9.74e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2278 - - mtr:MTR_6g008140 1106.28