Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2276 ATGGCTCTGCCACAATCCCCCTTTTCCTCCTTCACTAATGAATTTACCTATGATGTGTTCCTTAGCTTCAGGGGTCCCGACACTCGTCACTGTTTTACTGGCAATCTTTGGAAAGGTCTTTCTGACAGCGGAATCAACACCTTCATTGATGACAAGGAGCTTGAGAGAGGGGATGAAATCACACCGGCACTTGTTAAGGCCATTCAAGAGTCAAGGATTGCCATCCCCGTGCTCTCTACCAACTATGCCTCTTCTTCCTTTTGCCTAGATGAGCTTGTAAACATCCTTGACCGGCGGCTCGAAGCAAAAGGTCGGTTGGTTTTGCCGGTTTTCTATAACGTGGATCCTTCTCATGTGCGGCATCAGACTGGGAGTTATGGAGAAGCACTTGCTAAGCATGAAGAGAGGTTTACAAATAACATGGAAAATTTCACAGGTAACATGGAGAGGTTGCAGAAATGGAAGGTGGCTCTGCACCAAGTAGCTAGCTTGTCTGGTCACCATTTCAAACCTAGGAAAGAGTATGAACATGAGTTTATTGCTAAGATAGTTAAAGAAGTCTCAAATAAGATCAATCGCGCCCTTTTACATGTTGCGAATTATCCTGTTGGATTGGAGTCTCGAGTGTTACAAGTAAACATGCTTCTAGGTGATGTATCCGATTTTGGAGTCCACATGGTAGGAATTTATGGAATTGGAGGGATGGGTAAAACAACACTTGCACGAGCAGTTTACAATTTGATTGCTAACCAATTTGAAGCTTCTTGTTTTCTTCATGATGTGAGAGAGAATTCAAACAAACATGGCTTAAAACATCTCCAAGAGAAGCTCCTTTCTAAGACAGTTGGACTGAACATTGAGCTAGGTGATGTCAATGAAGGAATTCCAATAATAAAGCAAAGGCTACATAGGAAGAAGGTTCTTTTGATATTGGATGACATTGATGAATTGAAGCAGCTGCATGTTATGGTTGGAAGACCAGATTGGTTTGGTCCTGGAAGCAGAGTTATTATTACCACTCGGGACAAACATTTGTTAGCAAGTCATGGGATTGAAAAAACATATGAAATGGATGAGTTAAATAAGGAAGAAGCTCTCAAATTGCTTAGATGGAACGCTTTTAAAAGTAATGAAGTTGATTCAAGTTACAAGGACATTTTAAACCTTGCGGTAACTTATGCTTCTGGCCTACCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAGGTATAGAAATGTGGAAATCAACATTAGATCGATATAAAAGAATTCCGAATAAAGAGATTCAAAAGATACTGAAAGTAAGCTTTGATGCTTTGGAGGAGGAAGAGAAACGTGTTTTTCTTGACATTGCTTGTTGCTTCAAATCGTATCCATTGGTGGAGGTTGAGGATATACTCCATGCTCATCATGGTGCGTGCATGAAACATCACATTGGAGTTTTGGTTGAAAAATCTCTTATAAAGATGGATGATTATGGCAGCAACATAACATTACATGACTTGGTAGAAGATATGGGTAAAGAAATTGTTCGGTCAGAATTACCGACAGAGCCCGGGAAGCGCAGTAGGCTATGGTTCCCGAAAGACATAGTTCACGTTTTAGAAGACAATACGGGGACAGGTAGAATTGAAATCATATATTTGCATTCCCTCTCAATTGAAGTAGCTGTAGATTGGAATGGAAAGGCCTTTAGGAAGATGAAAAGTTTGAAAACACTTATTATTAAAAGTGGTCGTTTCTCCGAAGGTCCCAAATATCTTCCAAGTAGTTTGAGAGTGCTGGAATGGCAAGGATATCCTTCACAGTATTTTCCATCTGATTTCAATCCAAAAAAACTTACCATATGCAAATTATCCAACAGTTGCTTTACATCATTTGAATTGGCTGGCTTATTGAACAAGAAGTTCGTGAATCTGAAAGTTTTGAATTTTGACTATTGTGAATATTTAACTGAGATACCTGATGTATCTGGTCTGAATTTGGAAGAACTTTCATTTGAATGTTGTGAGAATTTAATTACAATTCACACTTCGGTTGGTTTCCTGAATAAACTTAGGATCTTAAATGCTAAAGGTTGCAGCAAGCTTAAGAGTTTTCCAGCCATAAAGTTGACCTCTCTTGAAAGACTAGAACTTTCACATTGTAAGAGTCTCAAGAGTTTCCAAGAAATATTAGGAAATATGGAAAATATAGAATTCCTTTATTTGAAGGGAACTTCCATTGAAGAATTGCCTTTCTCATTTGGAAATCTTACTGGGCTTGATACATTAATACTGGAACAATCTGGAATGTTTAGATTTACAAGTAGCATAGTTATGATGTCAAAACTGTCTTCTATTATCGCTTTGAATTTGTGTGTATCTCTATTGCAAAAGGAGAATGATAAATTCAGCGCAAAGGAGTCTTCAAATGTACAACGTCTTTATCTCTTAAACTGCAACCTATCAGATGATTTTCTTTTAATAGGTCTCTCATGGTTTGCTAATGTAAAAGAGTTAGACCTATCTGGGAATGATTTAAAAATTCTTCCTGAATGCATCAAAGAATGTCGCTTTTTGTGGAAGCTTTGCTTGAATAATTGCAAGGATCTTCAAGAAATTAGAGGGATTCCTCCAAATTTGGAACATTTCTCGGCACTAGACTGCAAATCATTGACTTCATCATGTATAAGCATGTTACTGAATCAGGAACTTCATGAGTCTGGAAGCACCCTTTTTCGTTTGCCAGGAACAGCAACGGTTCCGGAGTGGTTCGAGCACCAAAGCAAAGGACCATCAATTTCCTTCTGGTTTCGCGGCAAGCTCCCTTCCATAGCCCTCTTCCTTGTTAGTACACCAATGCATCAAAACTGCTTTGACAGTTTATTTCTTTTACCTGGACCCAATCTGATCATTAATGGACATGAATATGCTCTAGATCATTTATTTCATCCTATCTATCTCACAATAATGCCAGATCACACATATCTTTATGACCTGCAACTGCATGGAAGGAAATTCAAAGACATGGATAAAGCACTTTTAGAAAATGAGTGGAACCAGGCAGAGATCATGAATGAGGATTGGATGAGGAGATCGATTGATATAGAAAGCGGAATCCATATATTCAAACAGAAAAGTAGCATGGAGGGTATTCGATTCACCTGTCCTTATAAAAAAGAAACTTAG 3177 0.385 MALPQSPFSSFTNEFTYDVFLSFRGPDTRHCFTGNLWKGLSDSGINTFIDDKELERGDEITPALVKAIQESRIAIPVLSTNYASSSFCLDELVNILDRRLEAKGRLVLPVFYNVDPSHVRHQTGSYGEALAKHEERFTNNMENFTGNMERLQKWKVALHQVASLSGHHFKPRKEYEHEFIAKIVKEVSNKINRALLHVANYPVGLESRVLQVNMLLGDVSDFGVHMVGIYGIGGMGKTTLARAVYNLIANQFEASCFLHDVRENSNKHGLKHLQEKLLSKTVGLNIELGDVNEGIPIIKQRLHRKKVLLILDDIDELKQLHVMVGRPDWFGPGSRVIITTRDKHLLASHGIEKTYEMDELNKEEALKLLRWNAFKSNEVDSSYKDILNLAVTYASGLPLALEVIGSNLFGKGIEMWKSTLDRYKRIPNKEIQKILKVSFDALEEEEKRVFLDIACCFKSYPLVEVEDILHAHHGACMKHHIGVLVEKSLIKMDDYGSNITLHDLVEDMGKEIVRSELPTEPGKRSRLWFPKDIVHVLEDNTGTGRIEIIYLHSLSIEVAVDWNGKAFRKMKSLKTLIIKSGRFSEGPKYLPSSLRVLEWQGYPSQYFPSDFNPKKLTICKLSNSCFTSFELAGLLNKKFVNLKVLNFDYCEYLTEIPDVSGLNLEELSFECCENLITIHTSVGFLNKLRILNAKGCSKLKSFPAIKLTSLERLELSHCKSLKSFQEILGNMENIEFLYLKGTSIEELPFSFGNLTGLDTLILEQSGMFRFTSSIVMMSKLSSIIALNLCVSLLQKENDKFSAKESSNVQRLYLLNCNLSDDFLLIGLSWFANVKELDLSGNDLKILPECIKECRFLWKLCLNNCKDLQEIRGIPPNLEHFSALDCKSLTSSCISMLLNQELHESGSTLFRLPGTATVPEWFEHQSKGPSISFWFRGKLPSIALFLVSTPMHQNCFDSLFLLPGPNLIINGHEYALDHLFHPIYLTIMPDHTYLYDLQLHGRKFKDMDKALLENEWNQAEIMNEDWMRRSIDIESGIHIFKQKSSMEGIRFTCPYKKET* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2276 1058 Pfam TIR domain 17 193 IPR000157 GO:0007165
Lja2g2276 1058 Gene3D - 359 443 IPR042197 -
Lja2g2276 1058 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 166 IPR035897 -
Lja2g2276 1058 Gene3D - 190 353 IPR027417 -
Lja2g2276 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 453 IPR027417 -
Lja2g2276 1058 PRINTS Disease resistance protein signature 394 408 - -
Lja2g2276 1058 PRINTS Disease resistance protein signature 301 315 - -
Lja2g2276 1058 PRINTS Disease resistance protein signature 226 241 - -
Lja2g2276 1058 PRINTS Disease resistance protein signature 705 721 - -
Lja2g2276 1058 ProSiteProfiles TIR domain profile. 15 191 IPR000157 GO:0007165
Lja2g2276 1058 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 1020 IPR044974 GO:0006952
Lja2g2276 1058 SMART AAA_5 223 363 IPR003593 -
Lja2g2276 1058 Gene3D - 10 189 IPR035897 -
Lja2g2276 1058 Gene3D Ribonuclease Inhibitor 720 912 IPR032675 -
Lja2g2276 1058 Pfam NB-ARC domain 212 439 IPR002182 GO:0043531
Lja2g2276 1058 SUPERFAMILY L domain-like 514 920 - -
Lja2g2276 1058 SMART till_3 16 164 IPR000157 GO:0007165
Lja2g2276 1058 Gene3D Ribonuclease Inhibitor 537 719 IPR032675 -
Lja2g2276 1058 SUPERFAMILY "Winged helix" DNA-binding domain 429 538 IPR036390 -
Lja2g2276 1058 CDD AAA 229 342 - -
Lja2g2276 1058 PANTHER ARCHAEAL ATPASE 29 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2276 Lja-Chr2 26609105 26618162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2276 6 792 WRKY Transcription Factor Family AT4G12020 29.571 3.94e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2276 - - gmx:100780257 1224.54