Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2271 ATGATGTTAGCCAATAACTTATCTCCATCTTCAGTTCCCACTTCTGATCCTTTTTCCTGCACTGAGAATGGCACTTCTACTGCCATCAATAAAAGGAAGAGAAGGCCTGCAGGCACACCAGATCCAGATGCGGAGGTGGTGTCTCTCTCACCCAAGACACTACTGGAATCGGATCGCTACGTGTGCGAGATCTGCAACCAGGGATTCCAGAGGGACCAAAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACCCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCAGAACCAACCTGCTTGCACCACGACCCGTGTCACGCGTTAGGTGATCTCGTTGGGATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCCCATCTCAAAACTTGTGGCACCAGAGGTCACTCCTGTGATTGTGGCCGAGTTTTCTCAAGGGTGGAGAGCTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCCGCCCGGAATCTCAGCCGCTTCAGCAACAACCTCCAGCTGCATGCTTGTCTAGAACTGCTTCAAGCCCAAGTCCATCCAGTGAAACAAACTTCAGCACAGGCCCTTGGCAAACCAGGCTTCAAGTAGTACCACCAAAGCCCATTGAAGTACCTACCATTTTCATGAACCCTACTCCTATCCATCCTCCTCCTGAAACCTCTTCCAAAAACAACAACAAACTCCACCCTAATTTGGAGCTTCAACTTCAACTCTCCACCACCAACAACAAATCATCAAACCCCATTGAGCTACCTTCTCCAAAGAATGATCAAAACATTAAGTATTCAACTCAGCTTCAACTCTCAATTGGGTCACCAAATTCCAGAGAGAAAAATGAAGCCAGCAATAATAGAAACCTATCACCCAAGGAGAGCAGCAACAGCATTCATGAGAAGGAAAGGCCACTTGGTGGTGGTGGAGGTAGTGGTGGTGGTGGTGCAAACATGGCTCTGATGAGGAACATTCAAGAGCAAGCAAGGGAGAACTTGAGGATAGCCATGGCTGAGAAAGCTTATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAAATTGAAATAGCTGAGCAAGAATTCACAAACGCCAAGAGGATAAGGCAACAAGCACAAGCTGAACTTGACAAAGCGTACAACTTGAAAGAACATGCAATGAAGCAAGTAAACTCCACCATGATGCAAATCACTTGCCATGCTTGCAGACAACAGTTTCAGGCAGCTCAAGATCATGAGAACTCCTTGGTGTTCAGCTACATGTCTTCTGCCATAACCACGGAAGGTGGCGAAGTAGAGAACGATCATCATGGAAAAGATAACTAA 1422 0.4796 MMLANNLSPSSVPTSDPFSCTENGTSTAINKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQQQPPAACLSRTASSPSPSSETNFSTGPWQTRLQVVPPKPIEVPTIFMNPTPIHPPPETSSKNNNKLHPNLELQLQLSTTNNKSSNPIELPSPKNDQNIKYSTQLQLSIGSPNSREKNEASNNRNLSPKESSNSIHEKERPLGGGGGSGGGGANMALMRNIQEQARENLRIAMAEKAYAEEARKQAKRQIEIAEQEFTNAKRIRQQAQAELDKAYNLKEHAMKQVNSTMMQITCHACRQQFQAAQDHENSLVFSYMSSAITTEGGEVENDHHGKDN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2271 473 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Lja2g2271 473 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lja2g2271 473 MobiDBLite consensus disorder prediction 304 327 - -
Lja2g2271 473 Gene3D Classic Zinc Finger 122 199 - -
Lja2g2271 473 PANTHER OS03G0310200 PROTEIN 2 461 IPR039288 GO:0009630
Lja2g2271 473 MobiDBLite consensus disorder prediction 192 229 - -
Lja2g2271 473 MobiDBLite consensus disorder prediction 304 351 - -
Lja2g2271 473 MobiDBLite consensus disorder prediction 192 263 - -
Lja2g2271 473 MobiDBLite consensus disorder prediction 1 46 - -
Lja2g2271 473 Coils Coil 366 421 - -
Lja2g2271 473 MobiDBLite consensus disorder prediction 240 254 - -
Lja2g2271 473 MobiDBLite consensus disorder prediction 1 32 - -
Lja2g2271 473 SMART c2h2final6 137 164 IPR013087 -
Lja2g2271 473 SMART c2h2final6 60 82 IPR013087 -
Lja2g2271 473 SMART c2h2final6 101 131 IPR013087 -
Lja2g2271 473 Gene3D Classic Zinc Finger 38 100 - -
Lja2g2271 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lja2g2271 473 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 2 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2271 Lja-Chr2 26420194 26423208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2271 5 461 C2H2 Transcription Factor Family AT1G25250 52.165 1.45e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g2271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2271 K25871 - gmx:100800187 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2271 2 26420194 26423208 Lja2g2271 2 26420194 26423208 ECH